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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp25568_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_KGM_17243_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.90 TPM:6.39
ORF Entry
Sequence
(Nucleotide)
AAAACAACAAAATCTGAAAGAGAATCAGAAATGTATGTACTCTAAAATCTAAACTGATAA
ATTGATAAATGGAATGTACTAAATCAATATTGAAAATCTGCAAAGTTACCTGTTTAAAAT
GTCTGACATAAATAGTTTGTTTGACTGTTTTGATGAAACACCAATAACTGAAGCTGCGAT
TCAGCTGCCAAATGTTAAAAATGTTGAAAAACCAAAATTGGAAGAGTTGACTGCTGCTGG
AAATAAGCGTGCACATGATGACATCCAGTACGCTGATACGTCTGTATCAAAAAAGCCTCG
CGAAGAAGAGGAAGACTCTGAATTGATTACCGACATAAATGTTGATCTGCTCCAATCTCG
TATAGTGATACACACGCTAGAAACTCACGAGGGCTGTACACATGAAGTGGCAATACCACC
TAATCAGGAATATGCTCCTCTTTTACCACTGACAACTGAACCTGTAAAGCAGTACAGTTT
CATATTGGATCCGTTTCAAAAAGAAGCAATATTGTGTATAGATAATTTACAATCTGTACT
TGTGTCAGCTCACACGTCTGCTGGCAAAACAGTGGTTGCCGAGTATGCAATAGCACTATC
ACTAAAAAACAAGCAGAGAGTAATATACACAACCCCTATTAAAGCTCTTTCGAATCAAAA
ATATAGGGAGTTCTCAGAGGAGTTTCATGATGTTGGTTTAATAACTGGTGATGTAACTAT
CAATCCCTCTGCTTCATGTCTTATCATGACAACTGAGATTCTCAGGAACATGTTGTATAG
AGGTTCAGAAATTATGAGAGAAGTTGGTTGGGTTGTGTTTGATGAGATTCATTACATGAG
AGATAAGGAGAGAGGTGTCGTTTGGGAAGAAACACTCATCCTTCTGCCGGACAATGTGCA
TTATGTATTTTTGTCTGCAACTATACCTAATGCACGTCAGTTTGCCGAGTGGGTCTGTCG
CTTGCATTCCCAGCCTTGTCACGTCATTTATACAGAATACAGACCCACTCCACTGCAACA
CTACATTTTCCCAGCCGGTGGTGATGGAATACATTTGGTTGTTGATGAAAAGGGTATATT
CAAGGAAGATAACTTCAACACAGCAATGACAGTGCTGAACAATGCAGGGGAAGCAGCGAA
AGGCGACCAACGTGGTAGACGCGGCGGACCCCGGGATAAAAATCAGACGAATATTTTTAA
CATTGTCAAAATGATTATGGAAAGGAACTTCGCTCCTGTGATCATATTCAGCTTCAGTAA
AAAGGATTGCGAACTGTATGCCCTACAGATGGCGAAGCTGGACTTCAACACAATTGAAGA
AAAAAAACTAGTGGACGAAGTGTTTAGCAACGCAATGGATGTTTTAAGTGAAGAGGATCG
GAAATTACCACAAGTAGAGAACGTTATACCTTTGTTGAGGCGCGGCATTGGCATACATCA
TGGAGGTCTACTGCCTATACTGAAGGAAACTATTGAAATATTATTCGGCTTAGGACTCAT
CAAGGCTTTATTTGCTACTGAAACATTTGCTATGGGATTGAACATGCCTGCGAGAACGGT
AGTGTTTACCAACTGTCAAAAGTTTGACGGGAAGGAAGTTAGATTTATATCGTCAGGTGA
ATATATTCAGATGTCTGGTCGCGCTGGTCGGAGAGGTCTCGACGACAAGGGTATCGTTAT
ATTGATGATCGACGAGAAGGTTACGCCCACTGTTGTCAAAGGCATGGTGCAAGGGAAAGC
TGACCCTATTAATTCTGCATTCCATCTCACTTATAATATGGTTCTTAATCTACTGCGTGT
AGAGGAAATTAATCCGGAATATATGCTGGAAAGAAGTTTCTTCCAGTTTCAGAATCAAGC
AGCCATACCGGATCTGATAGACAAGGTCAAAGCAAAACAGAAACAATACGACGCCCTGTC
CGTTAACGAGGAGAACTCCGTAGCTTCATACTCCACCATCAGAACTCAGCTTGATCTGCT
CGGGGACCAGTTTCGGTCGTTCATCACTAAGCCGGAGTACTTGAAGCCTTTTTTGCAACC
GGGAAGACTTGTCAAGGTGAAAACAGAGAAATACGAATACGACTGGGGCATCATAGTGAA
CTTCAGACATAAATCGAACAAAGGCAAGAAGGGACAAGAAGAGAATCCTTTGCCGGCCGA
GCCCGCCATTATTGTCGACATCCTACTGCACGTGAAGACGGCGGCCGGCGGCGACGGCGA
GACCAACGTGCCGTGTCCGCCCGGCGAGTCTGGCGACGTACAAGTGGTTCCAGTCGTACA
CACACTAATATACCAGATCAGTTCTCTTCGGGTGTACTATCCTAAGGATTTAAGGCCTTC
CGACAATCGGAAATCTGTATTGAAGACTATAGGCGAGGTGAAAAAGAGGTTCCCCGATGG
TCCCCCGCTGTTGAATCCCATCAATGATATGAAAATTAATGACTCAGTGTTTAAACAGTG
CGTCGATAGAATCAAGTTATTGGAAGAAAGACTATACTCACATCCGATCCACACAGACAA
AAACAGAAGCGCCCTGACAGCTGCCTACGACAAGAAACAAGAGCTGTATGAAGAGCTACA
GAACGCTAAAGCGGAACTGAAGAAGGCGAAGAGCATACTGCAGATGGACGAGCTGAAGAA
GAGAAAACGGGTGCTGAGGCGGCTCGGCTACTGCACCGCCGCCGACGTCATCGAGATGAA
GGGACGCATCGCCTGCGAGCTCAGCAGTGCGGACGAATTGCTGCTAACGGAGCTGATATT
CAACGGTGTGTTCAACGCGCTGACTCCGGAGCAGAGCGCGGCGCTTATCAGCTGCTTCGT
CTGCGACGAGAACTCCACGCAGGCCAGCGTCTCCGGCGAGGAGCTGCGCGGCGTGCTCAG
GCAACTACAGGAATATGCCCGACGAATAGCAAAAGTATCGATCGATTCTAAAATGGATTT
GGATGAAGATACTTACGTTAGTAAATTTAAATGTACACTCATGGACGTGGTCCTGTCATG
GGCCAAAGGAGCTTCGTTCCTGCAGATATGCAAGATGACTGATGTTTTTGAAGGTTCAAT
AATAAGATGTATGAGACGTTTGGAGGAGGTGTTGCGACAGCTGTGCCAGGCTGCCAAGAA
CATTGGCAACACCGACTTAGAGAATAAATTCAGTGACGCGATCAAAATGCTCAAGAGGGA
CATCGTGTTCGCAGCCAGTCTTTATATGTAGTTTTAAGAAGAACCGAG
(3228 bp)

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