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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp25558_c6_seq45
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_zinc_finger_protein_on_ecdysone_puffs_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005703 C polytene chromosome puff
GO:0005875 C microtubule associated complex
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.17 TPM:0.16
ORF Entry
Sequence
(Nucleotide)
GCAAGCCACCGCGCCCGCCGACACGTTCCAGTGAGTGAGTGTTCATAACATTATCGGGTG
GACGGTCCCATTCGAGATTTTGAAACAGTCCGACTGGGCATGAGCGTCCGACTCGTCAAA
ATGTTAATGTATCATCAACCCGCCGCACTCGCCACCGCGCCCGCCGACACGCTCCAGTGA
GGAGTGTTCATAAAATTATCGGTCCAACTCGCAATTTCGAAAACAATCTGACATTAATAG
GTGAGGTTGGTTAGTGGGATCCGCGTTATGTGCAGGATGAACCTTATGTTTATGATGTAC
CGTAGATTGAGGGGATCGGGACCCTTTCCAAATCCAACACAAAATTTCAATGGATTTTCT
TAGGGTCATACCAATAAAATTGAGATTAAAATAGTTCCGGAAGTTTAAATTTTCATATAC
AATGCATTATTATATATAGTTCATTGCAAAATATACACAAAAATAAAATAAAACTATTGG
GCCACATATGGAGACAATAGCTTTTCGATAGGGCTGGTGAGTACTGGCACTGTTTAGTTG
TTTAGGTAGGTACAAACTATTTATCTGAATAGATCCAAACTTCGCTTGACAGAAATTTCA
AATAGTAACAAAGATAATTAAATCGTTTTTAATACATTTTGTAGCTTTCCAATCCTATTG
ACAAATGATCGTTTTTTCTTAAATTGATAGTGACAAGATGTCTGAGTTTTGCTAGATTAT
AGAAAAAATATTGCCTTCAATTTAAAATTGGACCATTCAGTTCACCACAAAATTAATGCC
CACTATGCCTGTAAAGAAAATCTCAGATTTGTCTTTATTCTACCCAGAGTCCTTATTCCC
TCCAATCTATGGTACTCTTACTTGAAATTTTATTGATATTTTCAAGCTGTTTTAGATGGT
TCACTATCATTTTAGTTGGTGTAATATGCTTAAACAACTTCTAATATAATTTTATGTTAT
AAATATCAATTGACTGAGATCTAACATTCTCAATTCAATCCAAGTGATAAAACGCTAAAA
ATAAGTAAGTAAAAAAATGATTTTATCTAATTACTAATGGAGTAACTTGGATTAATATTA
TGTAACATAATAACGGAGATAAAATTGATTTAATTTTACTTGACAGTGGCTGTTTCTTTG
TTGGTCGAATTTTAAAGTAAGTAACTTAAAACAAAGAGTAAAAGTAAAAATCAATTTGAT
TTCCATTATTACATGCAAAGATACTGAAATTATAATTATTTAAATATTGAGAATTTTCAT
ACTTAAATAACACATGCAAGGAATACATTATGTCCTGTAACTTACAGCTGTCTTTTTAAG
TTAAATCTTTTGAAACTCTCATTCCATTTAGTTTAGTAAACTTAAATATTTTAGGAGACA
AACAGAAACCTTCACATCACAATATAAATATTTTGTGTATGTTATTAGATTAGATAGTTG
GTGAAACTTCATGAGCGAAAATTTTACCACAATACAGTAATGTAAATAAAATGTAATCAA
AATAAGAATAGGATTTGCTGATGGAACACAATTTGAAAGAGATTTTTTTGTGGATTTCCA
TAATTCATCAACATAGGATTTCATTTATAGATTATTTACAGATATTATTTTGGATAATTA
ATTTGGTAGAAAGTCAATCCTGTCCTTATTTCGCTTGCATTGTAAATATTTTTATCCAAA
GCAGTAATTTCGGTTGCTTGTAACTAGCAAGTTCTGGGACAACATACACTTGTTCTAATA
TCTGCCACGGCCCCTGCCTCTACCGCGTGCTCTAGCTCTCGGTGAGGGTTTCGGTTTCAC
ATCTGGCACGGGTAGAGTTAATTGAGGACTTTTTTCTTTTTCTGGGGGCTGTTCAATTAC
TTCCGCTACTTCAGGCTTCTCTTCTACTGGATCCTCGATTTCGGCTGTCGCTTCAGGTTC
TATTTTAGGTTTTATATCTGGTTCACCAAGTTCTTCTTGGGATTTCTTCTCATCTTCCAG
TATTTCATCAACCGACTGCTCCCAATCTTCAAGATCATCATTATTTGGAATACCGTCATC
AAATTGTTCATCACGGTTTGTGTCTGTATATTCATTAGCATGTTCATTGTCATTGTCATT
ATCATTGTCGTTGTCATTATCATTTTCATAATCTTGTCCTTCATGATCGGAAGATGTCTT
GCGTCTCTTCCAGTTACCAGATTGATCGTTGCGTTCAGAAGGACGTTTCCCATTTGAATT
CTCAGTGGATTGAGTTCCCGCTGGTTTGTGTCCAGTCTTCTCAGAAAGCATCTTCAGGAA
GAAAACGTGATGTCTCCAGGTTCTCAAGTGCACATCAGCAGTTTCCTGCGAATCGAGGAG
TTTCTTGCACAGCTTGCATTGTATGCAGCGGAACTCAGTCAAGAACGATTGACCAACACC
ACGTTCCGTACTGTAACTTGGGAACATATCCTGAGTGACATAGCTGAGATCATCATCTTC
TTTGAAGTCCAGGATGACCTTTTCATCATCAACAGGTTTACTATCAGCCTTCTCACTCAC
ATCTTTCATCTCTTGATCTTCATTTTCAATCTTAGCTTTGTTTTCAGTGTCAGTTTGCTG
TTCATCAGTTTTATCATTGTCATCATGCTTCTCTTCTTGAACATCATCTCTGCGTGGTCT
ACGCTGACGACGCTCACACAGGTATGACTGCTCCATGCCCAAAGTTGAAATCATCAACAT
TTCAGGCTTGGGCTTTGAAAGTACATCTTGTTTATCCTGAATTGCACGCAAATGTTCAGC
AGTGAGACGGTGTTCATCTAATTCAATTCTAGTTGGCAACTCCTTGTGGCAAGTATTACA
GAAGGGATGTAGGTATTTCTTAAGCTTCCGGTGTCCAACGGTAGTCCGGTGAGCTGCTCC
GTTGGCCGCATACATATCACACATAGCACAGTAGAAGTCTCTAGCTGGTTGCTGACCAGA
TTTGCGGGTGCGTTTCATTTCACGAATCTTATATTCTTGTCTCATTGTATCAGCAGTAAG
AGCATAGCTCTCAACAGTCTTCTGCATCATAATGGCATGAGCTCTTCCACTGAGATGATT
CTCAAATGAACGTCCATCCCACATGCTCTTGTGGCAGATGTGACATTTCAGCAGCTTTGA
ATTAATGTCATCATAGCGCGTTTTAGGGACATCTTGCTTTTCATCCTCTTCTGGCTCTTT
TCTCTCATTTTCAGGTTTGTCAGTCTCAGTAGTCTTCTCTTCCTGTTCACTCTCCTTAAC
AGGCTTAGCTTTAGAATCGGTTTCCTTTTTCGGGGAGTTCTTGTTATGCTGCCGTTGCCC
TTCATTGGGCCTGAACGGTTTACGATTCATGTTGATACGCTCACCAGCGCGATTGTAATT
TCCCGTACGCCGGAAATTACCATGATTGCCCATCTAAAGGGAATTCATTAGAATATTGTT
AGTTCGAAAAATTTTGGACTAGCATGTCCGGAGGAGGAACTGCAATTTTCCAAAAAGGTA
CTTGACACAAAATTTCACAGGGTCTATATTGGCAACTGAATTTGAATTTTGGGAATTTTA
TTAATTGCATTAAAAATGGTGTTTGACAACAACTAGAAAAATTCACAGATTAACATTGAA
TGAATCATTTTCAGCATTTTAAAAGAAGATTAATGTTGATATCAACTTTCGAGAAGTACA
GCTTTTTTTGTCAAGACTTGTTGGTTCCACCGTTCCACTCAGTTCTGCTGTAACCATGAA
AACCAGTTAACTTAGTAAAATAATAATTAATTAGATACGACTTCTAGTTTCTACAGGATT
AAGTTACTACTTAATTTCAAGTCTCAAAAATTGCAATTGTTCTGAGACAAAATAACACAG
GTTCGATTCCAATATATTTTTCGAATGTAGTAAGAAGGCAAAGTATATAGGATACTTAAA
TTTTT
(3905 bp)

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