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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp25558_c6_seq23
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_zinc_finger_protein_on_ecdysone_puffs_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005703 C polytene chromosome puff
GO:0005875 C microtubule associated complex
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.10 TPM:0.09
ORF Entry
Sequence
(Nucleotide)
AATCATTCCCCTTAATAGCACTTATGCTATGAACGTCTTTGTTCCATTGTATATTATGGT
AACTGTAACCCAAGACATATTTTTATTTGATTAGTTCCAATGTAAGTTATCGTACGTGTA
ACATACCCTACTTAATCCTACACATATATCAACGTAAAGTATAGTAAGTACTACATACAA
CGAAATACCATTGATATTAACCGTAGTAGAAAACCGTATGTGACTTTTAAGAAATTCTAG
CAAAAAATTCAAAAAAACTTTTTGGAAGTAATATTCCTAAGTTTGAAATTGATTGTTAGT
TCGACTCCCTAATGTATGTGTTTATTCGTTCGCGATTCCACATATTTTTTTAATAAAAAA
GCAACATCATTAATTTATTGTAGTTCGTAAAGCACTTTGTTACGTTTTTCTTTTTTTCAT
TTTACAAAATATGAAATCGTAGCACATATAAATTAGCGTGGACAGAAAAGGGTAATTTAA
CAAAATATAAAACTTTTATGTTTGAGCTAACAATCTTCAAAAGGCTTCAAAGGCAAATAC
ATACAATAAGAGAAGAAAAACAAACACTAAATTATGGACATGGCAAACTGAAATTATAAT
TGAAAGACTAAGACACAATAAAAAATCCGTATCGCACTTCTAAATACATATTCTTACAAC
TTTTACATTGTAACTATTCTCATCTACAGTAATCAGTGGTTTAAAAACTAGCAACTTTTT
TACGCAGCAAAACCTACAAGATTTTGTATCACATTCAATTCTAAATGGTAATAATTGACA
TGAAGATACTAAAATGTTACCGTAGATTGGGGGAATCGGGACTCTTTCCAAATCCAACTC
AAATTTTCAATGGTTTTTCTTAAACTAATAAAATTGAGATTAAAATAGTTCCGGAAGTTT
AAATTTTCATATACAATGCATTATTATATATAGTTCATTGCAAAATATACACAAAAATAA
AATAAAACTATTGGGCCACATATGGAGACAATAGCTTTTCGATAGGGCTGGTGAGTACTG
GCACTGTTTAGTTGTTTAGGTAGGTACAAACTATTTATCTGAATAGATCCAAACTTCGCT
TGACAGAAATTTCAAATAGTAACAAAGATAATTAAATCGTTTTTAATACATTTTGTAGCT
TTCCAATCCTATTGACAAATGATCGTTTTTTCTTAAATTGATAGTGACAAGATGTCTGAG
TTTTGCTAGATTATAGAAAAAATATTGCCTTCAATTTAAAATTGGACCATTCAGTTCACC
ACAAAATTAATGCCCACTATGCCTGTAAAGAAAATCTCAGATTTGTCTTTATTCTACCCA
GAGTCCTTATTCCCTCCAATCTATGGTACTCTTACTTGAAATTTTATTGATATTTTCAAG
CTGTTTTAGATGGTTCACTATCATTTTAGTTGGTGTAATATGCTTAAACAACTTCTAATA
TAATTTTATGTTATAAATATCAATTGACTGAGATCTAACATTCTCAATTCAATCCAAGTG
ATAAAACGCTAAAAATAAGTAAGTAAAAAAATGATTTTATCTAATTACTAATGGAGTAAC
TTGGATTAATATTATGTAACATAATAACGGAGATAAAATTGATTTAATTTTACTTGACAG
TGGCTGTTTCTTTGTTGGTCGAATTTTAAAGTAAGTAACTTAAAACAAAGAGTAAAAGTA
AAAATCAATTTGATTTCCATTATTACATGCAAAGATACTGAAATTATAATTATTTAAATA
TTGAGAATTTTCATACTTAAATAACACATGCAAGGAATACATTATGTCCTGTAACTTACA
GCTGTCTTTTTAAGTTAAATCTTTTGAAACTCTCATTCCATTTAGTTTAGTAAACTTAAA
TATTTTAGGAGACAAACAGAAACCTTCACATCACAATATAAATATTTTGTGTATGTTATT
AGATTAGATAGTTGGTGAAACTTCATGAGCGAAAATTTTACCACAATACAGTAATGTAAA
TAAAATGTAATCAAAATAAGAATAGGATTTGCTGATGGAACACAATTTGAAAGAGATTTT
TTTGTGGATTTCCATAATTCATCAACATAGGATTTCATTTATAGATTATTTACAGATATT
ATTTTGGATAATTAATTTGGTAGAAAGTCAATCCTGTCCTTATTTCGCTTGCATTGTAAA
TATTTTTATCCAAAGCAGTAATTTCGGTTGCTTGTAACTAGCAAGTTCTGGGACAACATA
CACTTGTTCTAATATCTGCCACGGCCCCTGCCTCTACCGCGTGCTCTAGCTCTCGGTGAG
GGTTTCGGTTTCACATCTGGCACGGGTAGAGTTAATTGAGGACTTTTTTCTTTTTCTGGG
GGCTGTTCAATTACTTCCGCTACTTCAGGCTTCTCTTCTACTGGATCCTCGATTTCGGCT
GTCGCTTCAGGTTCTATTTTAGGTTTTATATCTGGTTCACCAAGTTCTTCTTGGGATTTC
TTCTCATCTTCCAGTATTTCATCAACCGACTGCTCCCAATCTTCAAGATCATCATTATTT
GGAATACCGTCATCAAATTGTTCATCACGGTTTGTGTCTGTATATTCATTAGCATGTTCA
TTGTCATTGTCATTATCATTGTCGTTGTCATTATCATTTTCATAATCTTGTCCTTCATGA
TCGGAAGATGTCTTGCGTCTCTTCCAGTTACCAGATTGATCGTTGCGTTCAGAAGGACGT
TTCCCATTTGAATTCTCAGTGGATTGAGTTCCCGCTGGTTTGTGTCCAGTCTTCTCAGAA
AGCATCTTCAGGAAGAAAACGTGATGTCTCCAGGTTCTCAAGTGCACATCAGCAGTTTCC
TGCGAATCGAGGAGTTTCTTGCACAGCTTGCATTGTATGCAGCGGAACTCAGTCAAGAAC
GATTGACCAACACCACGTTCCGTACTGTAACTTGGGAACATATCCTGAGTGACATAGCTG
AGATCATCATCTTCTTTGAAGTCCAGGATGACCTTTTCATCATCAACAGGTTTACTATCA
GCCTTCTCACTCACATCTTTCATCTCTTGATCTTCATTTTCAATCTTAGCTTTGTTTTCA
GTGTCAGTTTGCTGTTCATCAGTTTTATCATTGTCATCATGCTTCTCTTCTTGAACATCA
TCTCTGCGTGGTCTACGCTGACGACGCTCACACAGGTATGACTGCTCCATGCCCAAAGTT
GAAATCATCAACATTTCAGGCTTGGGCTTTGAAAGTACATCTTGTTTATCCTGAATTGCA
CGCAAATGTTCAGCAGTGAGACGGTGTTCATCTAATTCAATTCTAGTTGGCAACTCCTTG
TGGCAAGTATTACAGAAGGGATGTAGGTATTTCTTAAGCTTCCGGTGTCCAACGGTAGTC
CGGTGAGCTGCTCCGTTGGCCGCATACATATCACACATAGCACAGTAGAAGTCTCTAGCT
GGTTGCTGACCAGATTTGCGGGTGCGTTTCATTTCACGAATCTTATATTCTTGTCTCATT
GTATCAGCAGTAAGAGCATAGCTCTCAACAGTCTTCTGCATCATAATGGCATGAGCTCTT
CCACTGAGATGATTCTCAAATGAACGTCCATCCCACATGCTCTTGTGGCAGATGTGACAT
TTCAGCAGCTTTGAATTAATGTCATCATAGCGCGTTTTAGGGACATCTTGCTTTTCATCC
TCTTCTGGCTCTTTTCTCTCATTTTCAGGTTTGTCAGTCTCAGTAGTCTTCTCTTCCTGT
TCACTCTCCTTAACAGGCTTAGCTTTAGAATCGGTTTCCTTTTTCGGGGAGTTCTTGTTA
TGCTGCCGTTGCCCTTCATTGGGCCTGAACGGTTTACGATTCATGTTGATACGCTCACCA
GCGCGATTGTAATTTCCCGTACGCCGGAAATTACCATGATTGCCCATCCTATTAGGTTCA
TACCCACGGTCAAACCGACCCATATTAGGCCCAAAGTCCCTCCTAATGGGCATGTCTAGG
AGCGATGGGACCGGGTTCTGCTTCGGTTGGAACAAATTAAGGAGGTTACTGGCAAGAGCC
AGCGTGGCCTCGGCGGAGCCTCCAGCCAGAGGGAAAAGGTTGGGTAACCGCTCCCCCGGG
CCTCCGGACTGCCACGGGGACACATTGTTACGTGGAAAGTTTTTCCCACGGTCGTTTCTA
CCGAAGTCCGTACGGCGTCCCGGTTGTGGTCTGCGGTTCGCCATCTTTGTAATTTTACTG
GAATCCGTTGGGGTTTTGATTGAAAATGACGCAAACAAGAATTTATATGAAATGAAATCA
CTGACCAGAGTTATTATATAGCAATTAAACACGAAATATTCCGAACAGTAACACGACGAA
AGCAGGAATTACAAAAGCAAAATCAGCTAATGAATGTTGGTACAAATCTCTACGCAATAT
GGCGAATGGCTACCGGTCGCGTCGGGCAGCAGTGCT
(4416 bp)

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