SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp25496_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		aubergine_protein_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.74 TPM:3.46
ORF Entry
Sequence
(Nucleotide)
TTTTTTTATTAATAAAAATGAAATTGTAATAAAAAAAAACATGAAAAACAAAAATCTTTT
CTAAAAGCTACATGTTGCATGTAAGTCAAAACTTATCACGAAACTTAGAACTAAAACGAG
GTAACATCGTTGATATAAAAGCCTTAAGTAACAGAGCAAAAAAAAAATAATAATTATACG
TTGGCTAGATTTCAGATCACTGCTTGTAGCGTGGAAGAATGCACTTGATTCAATTTGAAT
AACTTGTAATTTAATAATTATTCGTTTGCATTTCCACTCAACATCATTGTAGCCAAAATA
AAAAGAAAAATTTGACAATTGTCAATCAGATATAAAATGAATCTTATGTAGTAAACAACT
AGAACACTCATTACATTAATTATCGTAAAAACGAGTCTAGGTCACATGTACTACTACTAC
GCGCATTAGCTGCTTCTTGCTATGCCACACTAATCATACATCAAAAACGTCCGAGAGAAT
GAGTCTTATTTAATATATCTTTTAAAAAACTATGAAATGAATTACTTTGAGCAATATTAA
GCTCACGTTATGATTGCGAACTATTTCTAATAGAGTTCTATGATTTGTATGGTTATGCAC
ATCGAAAATAGTTTCTCGGTGGGTACACTTACTTAATCTAGAAAAAAATAGGTTGTCTTT
AAAAATACTTAGAGGAAATATAAAGTTTCATTCAATGAATAATGCGGTTGGTTGTGCAGA
CTGTTAGCTGCAAGGAATGCAAGTTTGTGGGCATATTGGCAGACCGATGGCACGCGAACT
TGGGAAGAGCAGTTGAAATACAAGTGTGTCAGTTTGTAGGTCAAACGTTGGATACGATCA
GGATTGAGTCCTGTGGTATCTTCAATCACATTATATGAGGTAGGGGCAATGGTACCTTCA
CGTACATTTTGTGAAACCAGATAGAAATCATATCGTTCAGGCAAGGTGACGACGTCGTCA
ATCACTGTGCCAGGGCGTGGATTTTCTCCGCTGCGACCACGTTGAACGAAGATTCGGGTG
TTAATACGTTTCGACACAATTATGAATGCCAACTTTATTTCGACTCCTGCATAAATTTCT
GCCAATTTCTTCTTTATCTCAGCAACTTCATGGCTGTGCACATAGGGGATTTGACCATCA
CCGACACCGTCGCGGTAAATGAAGATCCGGGCTGGGTAGGTCCCGTTTTTCTCGCGGAAT
TTTTTGACGGCGGACGCGATATTGAAACCCATGTGAGAGCTGAGTTCTTCTCCGGAAGTG
TGCGCATTGACGATTGAATAGTACTGAGTCATCTGTTTGTCGAGGGTGGCTACGAAGGCC
CCGAAGCTCTTTTCTTTCGAACGAGTGTCGTGGCACACGTCGTACCCGACCACCATCAGT
GACGGCAGTGGAATATCTACTGTCCACGGAGAACCCCCAAGCTTACAGTTAATTTGAATA
GCAACTTTTGTAGCAATTGACATAGCCGACTTGCTACTCATGTTACGAGCGCAGACTACC
TGCGTCGGCACGGCTCGGTCTACAGTGCATTTCTTTTTTATGGCTTCATACCTATCAGCA
TAATTCCTAGCCAGAACGCACATTATCAGGGCAGGATTTTTCCTTGCAATCACTTCTTCA
CACATATTAGCATATTCTATCGGACCGTCATGACGAATCACAACTAAGTCAGGGCTTCTC
ATTCGAAAACCAACACCTCCGCCAGTTTTTATTATGAGATCAATGAACGACTCTGTATCA
CGGCGTTGTCTTTCTGGGGTGATCACTACCCAAGAGTTTAGTTGGGCAATAGCCAGGAGA
TGCTTCGATCTCATATCTCGCGTCCAGCCCTCGGTGGTGTCTCCTGCAGGGTATTTGACA
TTATTTGCTTGTATTATATTTTCAGGTGGAAGTTGGCGACCCTTTATTTTTACCAGTTCC
TTAGATAGTTTCAACGACCATGTGGCCAGTTCTTCAACAACTTCAGGTGTGCTTGTGAAC
CTCCTGTTGAAATTATTAAGCTTTTCAATGCGCTTGTCGGGCCCAATCTTTGTATGGACG
TCCAATGAGCGCATCAGCTTGAAATTAGCTCGCATCTCGTCGGAGAGGCCGGTCTGGCGG
CACAGTTCTGGCACCAGATATATCAACTCAGGCAGACCCGCACGAATCTCACGCGGCTTC
GACCGCGAGATCAGAAGCGGTTGACCCGGATCTTGAATGCGTAGATTGTATTTCTTATAA
TAGTATTCAATATAGGTAATGTTTTCGTCACGCATTTTAAATGTGGACTTCGGCGACACA
TTCCAAGCTACATCGTCAACTCTGTATGTTCTTTTATTGTAGTCAGTCATTACAATTTTT
CCAACAACATCTTCTAAAAATATTTTTTTGTAATTATTGCCTTTTGTTGCGGCATATTCA
CTCAACATTTGAAGAACAGTGTCCATGCGAAGCACCTTATGGGCAATTTCCGTAACCAAC
AACAAACGATCTTCATATTGATTGATTGTCGTTTTATATCCTGGCCAAATTTGAAGCTTG
AATTCTGGTATATCAATCTTTGCTTCAGGGTCAAAATAATCCCGTCCCATAAGCTGTAGC
TTCAATAAATTAAAGCATTTCCTTATAATGATGTTAAAGATTTGTATATAGTGATAGTCT
CCAGGGCTAACTTCGCAGGTCAGCTTAATTAAGATTCGCATACGTTCATTATCTGTTTTA
CGATCAGAGTATAGCTCCATGGGATCAGGATGCAGACGATTTACAGTGTACAACACAGTG
CCATCAAAGAGATATCCTCCGAGTGTTTTACTGTGAACACGCATCAGTGCCTTTCGGACT
CCAGTGCTGTCTTCTTCTGGAGAAATATCGACGTGATATTGATACAGGCCCCATTTGGGA
GTTGTTTCAACAGTAAAATAGTTGGCAAGCAGATCCAGGGGAGTACCCGAAGTACCTTTC
TTAGATGTTACAGCCTCTGGACGTGTGCGCAAGATGGAAATAGTTTCAGGAAGGACTCTT
CCACCCCCTCGTCGAGAGCCACGGCCAACTACAGATGATGCATCACCACCTCCAGATGAA
TGGGGTCCCAGTTCTAATTTTTGCATGCGTTGTTGCACATCAATATCTCCTGGATGTTCA
TGTGTAGTGGGAGTAACACGGTGAGAGGCGCGTCCTGCTTGTGCTGTTGGTGTCGGGACA
CCAGCTCTTACTGGAGGAACACTGGATTGTGGTCCCCAGCCAGATGGAGGTTGAGGTCTA
GGACCAGGTGGCATAGATTGTTGTGATGGGCCTGCTTGTTCTCCTGGACGTCGTGGTGCT
GGTCCGCCTCCATCACCACCACGACCAGCGCGTCCTCGAGCTCGTCCTCTACCTCTCGGT
TCTGACATCCTAAGTTGGTATCTCAAATAATTTTAATTTTCTCTGCGTTTTGTATGGATA
TTCAGGGCTCGTTTTTAACTAAATACTAGTACCACGGAC
(3459 bp)

- SilkBase 1999-2023 -