SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp25446_c4_seq1
Scaffold_id
NCBI non-redundant
(nr)		Niemann-Pick_C1_protein_[Papilio_machaon]
Ontology
GO:0001618 F virus receptor activity
GO:0004872 F signaling receptor activity
GO:0004888 F transmembrane signaling receptor activity
GO:0005319 F lipid transporter activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0006897 P endocytosis
GO:0006914 P autophagy
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0007628 P adult walking behavior
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015248 F sterol transporter activity
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0016242 P negative regulation of macroautophagy
GO:0030301 P cholesterol transport
GO:0031579 P membrane raft organization
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0033344 P cholesterol efflux
GO:0042493 P response to xenobiotic stimulus
GO:0042632 P cholesterol homeostasis
GO:0045121 C membrane raft
GO:0046686 P response to cadmium ion
GO:0046718 P viral entry into host cell
GO:0048471 C perinuclear region of cytoplasm
GO:0060548 P negative regulation of cell death
GO:0070062 C extracellular exosome
GO:0071383 P cellular response to steroid hormone stimulus
GO:0071404 P cellular response to low-density lipoprotein particle stimulus
GO:0090150 P establishment of protein localization to membrane
GO:2000189 P cholesterol homeostasis
Transcript
Level		FPKM:3.25 TPM:3.01
ORF Entry
Sequence
(Nucleotide)
GCGAGTTAAATTTTACTCTCAACGTGTCTAAAGAAGTTTCACTTCGAAACACGAAAACGT
GTTTGTAAGAATAAATATGGTTTTCACAATTTTATCACCGTTCTGTCTCTATTGTAGTAG
CGTAGACAGCCAGCCAAAGTCACAGTCCACCTATGGTTACGCGATTTCGCGACTCCTGCC
TTTCCCTTAAAACATAACATCTAGCTTCAAACGCTTTCCTAATACCTAAATTGAGTACTG
ACACGGTGTGTTTCAAGGTTAAATGGTTAACTAGTAAGTATTCACCACCATCTTTGGTAT
TTATGTCGAAAACGATCATAAATTCAGGCTCAACGGGTAGGGTAATCACTGTTTCGATAT
AATAGACTTCGAACTCATTTTGGCGGTTTCGCGACTTCATCCTTGTGGGCGCAGCTAACT
ATTTAGCTTCAGAAGGCCCATAAACGTGTACTAATCTCGACAATAGAAAAAAAAAATCAT
TTATGGTAACACGTACGTTAAAATACAAATAAAATAGTAAATTATGTTTGTTGATTGAAT
TGGTTATAGGGCAAACAAATACGATTGAAATTTAAAACGATCTCGTTTTTATATTATTGA
GGAATAACAGCAGAGCAGGGAAAAACACCAACCCATGCAAGAACCCTAGTATTATCAGAC
TAAAAAACATCCTAAAGAAGAACACTTCTATAACTTCAGTGTGAGAAAATGCTAAAACTA
CAATTGGTATGTTCGTAAATGTAATTCCAGTAATAACAGTGGAGCCGACTTTTTGTATTG
CGTCTTTCACTCTCTCGTGGTCTGGACGACGACTTGTCGCATAAGCGTATGCAATATGAC
TACAAAATTCAACCGATATACCAATAGACACGATAAGATTAATGCAAGACACTGGATTGA
GCGGTATATTCCAAATATACATTACGCCCATCATATCGATCACGACCATGACAGCAGTCA
ATATAACAGCGAAATTCGTCAAAAAGTTAAACCCAGACGCTAACAGGTTTATTGCTAAAG
CACCCAAAACTGAAAAACCTAACGCTGCAAACGTGTCCGACCAAATATTCAGGTATTGTT
CAAAAAACACGTAAAACACGGAATAAGGAAAAACTTCAACATCCATACCTGTGTGCTTCC
GGATAGCGGCAGTGATGTTATCACTAATCTCATAACCATATTTCACAGCATTGATGAAGT
CTGGCGACCTGCTCAGCGCCGTTTGATATGCCATAAAATTCGTGTCATAAACAATGGCAC
GACCTTCAGAATCAAGTAAATAATTAACACTGCTTGAGTAACTTGCCAACCCTCCCTTAG
TGCAGACTTGGCTTGGTTCGTCTTGTAGGAAAAAAGGTAAAAATGTTTCGAACGCCTCTT
TACTGGGTCTGAGGCCGTTAGACCATTCATTCCTGCTTATCGAACAATAGGCACACTCTG
GAGAAGTATCTAAAGTTTGACAAAACCCATTATCGGTAACGTTATATTTACAACAAGTCC
CGGGTAAGCTGGACCAATCAAAGAAGTCATCCAGCCAAGAATTTGAGCTTCGTGCTATAT
AGGTTATTTCACTGTGCTGAGCAGCTAGAAATATTTGTGTAATTAATGAATCTTCGTAAC
ACAGCTGGGTTCCGCAAATAACGTTTTGGTGATCCGGATTAGTAAAGTCTAAGCCAGCTT
TTAATACAAAATAAACTGGTGGGCCGAGACGCAATAGTTCACTGACAGCAACTAAATATC
TATATACGTATGAGTCAGTCGGTAAAGCCATTTCTTGGTCTAAGCCTACTTCTAAATGTG
GAACCGCAATAATACTCAGAGATAAAATGATCATAAAGAAAATTACAACAACAATTCTTA
TTTTCCAATTCGTAATTATATCAGAATACAATATCATAAATCTATTCATTATACTGACGT
GTGGAGGATCGTGGTCGCTATCCGTTGAAACTTTACTACGAATGCAAGGAAAAATATCGA
CACGTTTTTGTGCGACTCTTTTGTAGTCTAACGATAGTATACCGACAACTGCTGTTATCT
GAAATATAAAAAGAAAAGTCAAAGATAAGCTAGCAAATATAGAAAATGTTGCCACCGCTG
GAAAATCAGTAATACTACCAATTGCGAAACAGGTGATTTGCGTTACAGAAGACACAAACA
TTGAGGGGCCAACACTGCCCATCATTTTTTTCGAAAATAAAT
(2202 bp)

- SilkBase 1999-2023 -