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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp25390_c0_seq5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_tRNA-splicing_ligase_RtcB_homolog_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003972 F RNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0008452 F RNA ligase activity
GO:0016874 F ligase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0072669 C tRNA-splicing ligase complex
GO:2000237 P positive regulation of tRNA processing
Transcript
Level		FPKM:8.98 TPM:8.32
ORF Entry
Sequence
(Nucleotide)
TTACAAAGACAAATGTCGCGTATTGAGCGAAAAGGTCACTTATACCAAATAGCCTTCTTT
CACCTCTCGATATCATCTTATTAGACTCACACGAAAATTACTAACACCACGTGTTTTGCA
ATTCCTTTTATTGCACAACTAAAATGTAAGCACATGCGTGTCTCAGAAATACAATCAATA
CATAAAAATTAATGTCTTTTATTGAAAACATAGTACAATGGAAGGAGAGAATGACGTTCG
AAGGTCACATTCGGTCACAGAAGGCGGCACAACTTGCCAGGGTGGCTGCATTTTTTTATT
TATTGCTTAAATGGGTGGACGAGCTCACAGCCTTCCTGGTGTTAAGTGGTTACCGGAGTC
CATAGACATCTATAACGTAAATGCCGCCACCCACCTAGAGATATGAGTTCTAAGGTCTGG
TATAGTTAATCGTACCGTAATATTTCAGATTAATGTTTTAACATTTGTATTTGTGGTTTT
GACATGAATGAAATAGAAATACTGCATGTTTTAAACACAATGAAATTTTATTAATAAGAA
TAAATTTTTCATAGTGCTTATTTCAACTGTTTCATTGTTGTACTTTACAAATTCTTCACA
AGTTTTTAGGAAATCCATTACATGTTATTATAGTATAATTAGATAATTTATTCAATATAT
TAACTGTCTTAACAGTTCTTAGAAAGAATGATTATTTAAAAATCACATTAAGAAAGGGAC
TTCATCCTTTTATAACAGCAATTGGTCTTAATTTAACAGTTTTTTTGCTAATACCAGCAG
CATGACATGTATCTACAACATCTGTTACATTCTTGTATGACTCTGGTGCCTCTTCCATTA
CTAGTTTTGGAGATGCAACTCTAATGGAAATACCCATAGTTTCAAGTTTGTTTAGAACTT
CTTTGTAGTCTATGTTTCTTCTAGACTTGGCTCTAGACAGAGCTCGACCAGCACCATGGC
ATGTGGATCCAAACGTTTCTGTCATTCCTTGATGAGTACCAGTTAGTACATAACTGCAGG
TTCCCATTGTACCACCAATAAGTACAGGCTGACCAGTTAGTTGATAATCCACAGGTATTA
ATGGATGATTTGGTGGGAATGCTCTAGTTGAGCCCTTCCTATGTACTAGTAGAGTTTTCA
ATTTCCCATCTACTACATGTTCTTCAACCTTGGCAATATTATGAGACACATCATATATGA
CATGCATGTCAAGATCATCAGGTGCCATTTTAAATTGCTTTGCAAAAGCTTGACGGGTCA
AGAATGTCATTGAGCTACGGTTCACCCAAGCAAAATTGGCAGCAGCAGACATAGCTTTAA
GATAATCTTGACCTTCAACAGATTTTATCCTGGCACATGCAAGTTGTCTATCATTAGTTT
CTATGTTATCTCTCTTCATAGCTTTCTCCATTTGCACTAAAGCATCAGTTGCTACTTGAT
GCCCAAAACCACGACTTCCAGAGTGAATCATCACACAAACTTGACCAATACTTTCAATAC
CCATTTTTCCAGCAGCATATTTATCAAATATTTCATCAACAACTTGAATCTCTGCATAAT
GATTTCCAGCTCCTAGTGTGCCCAGTTGAGGTAGACCTCTTTTCTTTGCTCTGAGACTGA
CTTTTGATGGATCAGCATTCAACATTCTTCCATATTCTTCACAGTGTTCCTTATCTTCGG
CCCAAACATAACCTTCCCTTAGAGACCAGTCCATACCCATTTCCAATGCTTCTTCCAAAT
CACGTGCATTCATTGGAATAATACCCTTGGAGCCAACTCCAACAGGTATATGGTCAAACA
AGCTCTGAGCTAATTGTTCCTTAATAGGTAGAACATCCTTCTCATGTAAATTTGTTCTCA
ATAAACGAACACCACAGTTTATATCGAATCCTACGCCTCCTGGAGATACTATAGATTTGG
GATCATCCATATCAAAAGCTGCCATATTTCCTATAGCGAACCCATATCCAGAATGAACAT
CAGGCAATCCCACTGACCGGCCTACAATTCCCGGTAAAGCTGCAACATTAGCTATCTGTT
TTACACCAGGAAGGAATCCACCTGACATACCAGGTCTACAACAATTCCTAAGCTCCTCCA
ACATTAGTTTCTCAAGTGTACTGTTAACGTAAAACACTCCTTCAACATTCATATTTGGTT
GGAAGCCTTTTTTAATTCTCCAACAATATGGATTAATTTTTTCCAAATATTTAAGTTCTT
CATTATACTGCCTTACAACCATTATTTTGCACTACTTGTGTATCGAAAAGGTGTGTTAAT
GCTATTTAAACCTACTGGATAGGTTTGAAAAACGTAGGTAAATGGCAATTGAAAACTTAG
TTGAAAATTGAAAGAAGCGTTCAGAGAAGTGCAAGCTCGAAT
(2382 bp)

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