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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp25268_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		Uncharacterized_protein_OBRU01_02600_[Operophtera_brumata]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:2.99 TPM:2.77
ORF Entry
Sequence
(Nucleotide)
CACAGCCCACTGAGTTTCTCGCCGAATCTTCTCAACGGGTCGCGATTCCTAGCCAGTAGT
AGATACATTCGCGAAGCAGCTGTTCTTGAGCTGTTAGGTCTCTTTCGGTGGCGCTCGGCA
GCTGTTAGCAAATCATAGCTGAGCTTATCATATCATCACTCATAGCTGAGCCTTTGCACG
CCCACCAGTCATGGTGAAACTGAAAAGGCCTCCGGGCCACCATTAATCCTTCAATCATAA
AAAAATTAAAAAAATCACATAGTGACGACGTGTATACCGTTGCTCAATTCGACGCTCATA
ATTTGACTACTCCTTCCTACAATAATAATTAAACAGTCGACTTGGGACTGATCCGACCGC
AACAAACATGTTTTGTCGGATCCCCCGGATTCACTCTCGATACTTTTAGGACCTCAAGAA
CCGGTCCCTCAAGAACCGGTCAAAGTCCTCGTTGAACTAACGAAGAGTTCGATTTGGGAA
TCGGAAATTTCTTCATCGACCGCTCCTGCCCTTAACAAAACTATTCTTGTTCAGCATTCG
TATTTGTACTAAAACTCACGTATTGATTCTGCGGCTTCATCTAAGCAAAAATTCAGCACC
AAAGAAAAAATTTAGCAAACACCATTTATTTCATGCAAGATTAAAGTTTATTTTTAACAA
AAATCGCAAACACAGTGTGTCCTTCTTGTTTTCGTGGTGTTGAATCGCTATATTATAATC
ACCTCACGTATTGAGGCTGTGGAGAGGTATGTGAAAGAGAATTGAACACAATATACCCAC
AGAAAATTAAAAAAGAAGACTAATAAACTGTTGAGAATTATTTTCTTATCAACCGATATT
CCTTTCTTATCAACCGATATTCCTTTTTTGTATTTACGAGGCTTGTTTCTATCAATAAAT
ACTTTTGGAAATAGATTGAAGGAACAATTTCCAAAAAGGCAAAATACGTTCTTATAAAAA
TAAAGTGCTCGTAATCTTAAAGATAAGACGCCCGGTGTACTCGTATTGTATGATGCTAAT
AGGTAGGCATCAATTTCTCTAATAAAATATGTAGGTATAATACACAATATATCATTATAT
TCACAAAGGATTGAATGAACAACAGCGTGAATTAAACCCTCAAACAATATATCAATAATA
TATAATATACTAGCGGACCCAGCAGACGTTGTCCTGCATAGATAAATACTAATAATAATA
CCTAGATACCGACTGCAGCGCCAACTGCCAGGCTGATTTGTGAATCTAAACCATCCAGGG
TGCCACCCAAATGCATACAAAAACAATCATTCAAATCAGCCCAGCCGTTTAAGAGTTCGG
TGACACACACACGCACAGAAGCAATATATATAAAGATACAATATGGTCCAGGTATGTGTA
ATTCCAGGATAGTCAAAAGATCTTTGATTAAAAATTACTTGGTTATGTTTGGTTGTTTCC
AAAACCCATGACGAAGGAGACAATGTTAGCGTAGGGCCATTAAATGTGTAATACCAATGC
ATTTATTTATAATTGCATAATGTCTTAATGTAAGTACACAATTCAAACATAGTTTTCAGA
ATATGACGGACAACATTCACACAGTACAATCACTCTCATTACGTACATGAATATTGCTAA
CATATTGTCTGTAGTTTTACAGAACACATGGTACTCAAAAATATATTTATCGACAATTTA
GACCAAAACTCAAAAAAAATTGAATGCATCTTAATAATTTAAAATGCAAAAACTAAATGA
ATTTCTCAAGTATTTTCTTTTTAGTTGGAAAATGAAAACTAATCTGCATTGAATAAACAA
AGGATAAAATACAATTGTAAAAATACAAAGATATCATCGATAACAAAAATCCAATTGTAT
AAATGAAGGAATTTAAATTAAAAAAATATATATATGTGAATTTCTCTTGGACCCGAGCTG
CAACTCTTAAGACATTGAAAACCTTACTTGATCGTAATAGTCGTTGGCTTTAAAAAGTCA
ACAACAAAGTAGTTGATAAAAACAAACTTGTATTTCAATCAAACTTTAGTTGAGAAAAAG
CTAAGGTAAAAGAGACTTTTTATTATTTTAAATAACAGAAACTTTGCAGAAATTAATATT
TAAAAACTAAAAAGAAACCTAATGCTAGTGTCTCCTAAACCCATATTTCTTTCTCTCGTA
GAACAGATCTGTTTTAGAGCTTCCCAAATTGACAATCTTTGGACAGCCATCTCTATCCTT
CTCCTGTATCGTGCACTCTTTACAATAATAAGCATCAGATACTCCAGGCCCGCCGCAAAT
CACACATCGCCCCTGATACGAGCCATAGTTGCACTCGTCACAAATACGAACTAACGTGCA
CGGACGCACATAAGAATCGCAAATCACACATTTTCCGTCACATTTCTCACATAAACGTCC
AATAGCGACTCCGGGCTGTTTCCTGCAGAAAATTAAATCTGGATGATGTTTTGCCATGTT
TTTAGTTAGGTCTGGTCTGCTGGCGAATGTTCTTTGATTGTTATTATCAAACTTGTCGTT
TACTTTTTTTTTAACGAATAACCTAAAAACTACTACAAAGATTTTGACCCGGTAATTTTG
A
(2581 bp)

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