| Name | A_BomaMG_comp24936_c0_seq2 |
| Scaffold_id | |
NCBI non-redundant
(nr) | PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX23_[Amyelois_transitella] |
| Ontology |
| GO:0000166 |
F |
nucleotide binding |
| GO:0000354 |
P |
cis assembly of pre-catalytic spliceosome |
| GO:0000375 |
P |
RNA splicing, via transesterification reactions |
| GO:0000398 |
P |
mRNA splicing, via spliceosome |
| GO:0003676 |
F |
nucleic acid binding |
| GO:0004004 |
F |
RNA helicase activity |
| GO:0004386 |
F |
helicase activity |
| GO:0005515 |
F |
protein binding |
| GO:0005524 |
F |
ATP binding |
| GO:0005634 |
C |
nucleus |
| GO:0005654 |
C |
nucleoplasm |
| GO:0005681 |
C |
spliceosomal complex |
| GO:0005682 |
C |
U5 snRNP |
| GO:0005730 |
C |
nucleolus |
| GO:0006397 |
P |
mRNA processing |
| GO:0008026 |
F |
helicase activity |
| GO:0008380 |
P |
RNA splicing |
| GO:0010501 |
P |
RNA secondary structure unwinding |
| GO:0016787 |
F |
hydrolase activity |
| GO:0044822 |
F |
RNA binding |
| GO:0070062 |
C |
extracellular exosome |
| GO:0071013 |
C |
catalytic step 2 spliceosome |
|
Transcript
Level | FPKM:18.16 TPM:16.81 |
| ORF Entry | |
Sequence
(Nucleotide) | AAAAACAAATGTAATCTATGTAATTCATTCAACGTAAAAATTTTGATAATTAAAAATAAT
CAACAAAATTAATCAAACTCCAAAATATCATTCAAATTTCAAATCAATTTCGAATAATTT
TCTAGAAATTGAATATAAACTTCACAATAAATAAAAATGGAAGGAGACGGAGTAGAACCC
TCGAACCCTAAGTCGTATTCTGGAATACCAGAAGCTGAATTTGTAGATAATGTAGACGAA
TTTATGAAATCACCGATCAATGCTGAAGGAGTCGATGTAGTTTTGAAGAGTCTAGATGAA
AAGCACCGTAAGTATAAGGTGATGGAATACACGTTGGCTACTAAAAGAAGGCGATTACGG
CAACAAATCCCAGACTTAGCGCGGACAATTGAAGTAATTGAAAAATTAAAAGAACAAAAA
GAGGAAGTAGAAACACAGTTCCTTCTTAGTGATCAAGTATTCGTGAAGGCTAATGTACCA
CCAACAAAGTCAGTATGTTTGTGGCTTGGAGCTAATGTAATGTTGGAGTATAGTCTTGAA
GATGCTGAAAAATTACTGACTACAAATATGGAAACAGCTCAAGAAAATTTAAATCAAGTA
GAACATGATTTGGATTTCTTAAGAGATCAGTGTACCACTACCGAAGTGAATATGGCTAGA
GTTTACAACTGGGATGTGAAGAAACGCCAGGCAGCTTCTGGTCGCATTACCGCTTGTTAA
GTTTAACAACAACTGAATGTGTTGACTGCTCCAGTATAATAGATTCATTATGAATACAAA
ACACATTTGCAAGTATGCAATGTCATGAGGAACTACTACAGCAATGTCTAAATGAGTAAC
ATATTTATAAAATTGATATTAACCCTTAATCAAACACGGAACTTTTTGTGAGATAAATTA
AAAGTAAGGTTGGTTTTTAAGTAAAATAGGTCCGTAGATTCCAAAAATCTTAGTGGAATT
TCGAAAAAGTGGAGGGAAGGGGGTGTTTTTCGGTGGGAAATTATTTCCCCTTATTCGTAT
TCGCAAACACAAAAATCGCCAAATGGGAAAATAGTTCCCGTTATCCGTTACCACTTAAGA
TTGTTTTGGAGTATTTTTTAGACTAGTTAGTACCTCGGATTTGCCACAGATTTTTGTAAA
TATTTTTTTTTTAGACAATAAAAAACAATAATTATTCAGAAATATTTCATTACTTACTAA
GCTTTACAAAGATACAATTAATAATAAGTACTCTTATACGTATAACATATATACTATGTT
TGGATGAGATCTTTGTCCAGCAGTGGGACAATAATAGGAAAGAAAAAAACACAAAATAGG
TTAGATAAATTACTGAGAAGGAGCAGCGTGAAAAGATTTAAAGCATATTTTGGCACACAG
GGCTACTTGACACGTTGAACACTGTATATTGGTCCTCTTTTCTATTTTTTTCGTGCTACA
AAACCTGCATCTCTTATAAGTTTGTATTACGTCCGGCATGTGAATACCCACATTCATCAG
ACGGATTTCATCCGGCACTCCGAAAACTCCACCTTTTTTGTTTTTATAAACGACACTTTG
GATGTTTTCTTTTCTGGTGGTGTAGCTATTGATCAGTGAACGTGCTAAACGCAACCTGAA
TTCGCGATGTCCATGCAGCGTTGGTATATGTGTATGATTGTAGGTGATATACGCATTTAT
TATTGAGGCGTCAAAAAAGAAAAACAAAAGTCTCATCCAGTACTTCCTTGACTTTCTGTC
TGAGCATCTGGTTGGTCTAGGTGTACAGAAGGAGAATGGATACTATTTTCGTAACAAGGA
TCGTCTTCTTCATCGCATTCGGACAAATCTGAAAGATCCGCTAAATTTTCTATGCATATT
TCGAGTTCTTTCTTTGAGAGTGGTATTTTATTTATTTTTTCCATTTTGAAATAGCTGAAA
ATCATAAAAAATCATATATAATAACAAAATAAAAAAACCAAAACATACAAAGTGATTCCC
ATTGGACAGATAAACATTTTATATATATAGTTTGAATTTTTTCATGTCAGTAACAGACAA
GGGGAAATAAATTCCCACATTTTAAATAGTATATTTTTCCGTCAAATTATAACGTTATCA
ATGTTATTTTACAGCCAAAACCTTGAAAAATGAGTCTAGTTTAAGTTGACAATAAGTTCA
TGTACTTACCAGATTTTTTTCTTAACAATTTCCAAAAAAATAACGTTGCACTCCGACCAC
TTTCAAAAAAACGGGCAATTTTTGACTTTGACATTAGCTCACGGCGACATAAACTAACCG
TCACTAAAGTGCTGCCAAACAAAAAAAAAAGAATTACATCCGAGATTTATTTTGTTAAGA
CTGGTATTGGTCAATGTTGCTGTTTATGAAAAAACAAAGATTTTTGGAGGTGGGAAAATA
CTTCCCGTTATTTGATTAAGGGTTAAAGTGTTTATATAATTATACGAGTATTATGGATTA
ATACTTTTGGGTTTAATGATGCTTAGAAAAGTGGTGATAAGTTCTATGGGGGCTATTGCT
TTGGTTCCGGTTATCAAAGCGGCCGCCCCTATCAACGAGGAATCAAATGGTCCCGCGAAG
CCTCCACCCATGCGGGTATCGGAACTACCATTATATGAAACTCCACATGCCGATTATGCT
GAGTATCTTGAAGCCAAAGCCCATGAGCAGAAGACAAGCTACCTAAAATCAGCATTATTA
CCTCCAGTACGTGCTCTTAGAGAACAAGTGCAAACATTTGTAGATCAGACAGATTTCATC
AAACACTCCATTCAGGATAACTACCACGAATTCCAAGATAAGTCAGAATGGATCTTTAAG
TATTTGCGCGAGGAAGAAAATGAAGAAGTAAGATATGGAGCTGTTGCAATGGGTGGTCTC
ACAGGCTTCATATTTGGACTCAGGGGTGGATTTATTAGGAGAATAATATATGCTGGTGCG
GGTACCACAGCAATGGGACTAGTTTGTTTCCCTGAAGATACTAAGGAAATTTACAAGAAC
AATTCTGTCCTAGCTAAGCAGTACATCAACATTGCATATAATTTCTTATATGGAGTGAAA
CCAGGCGATCCACAGCTAGAAGTGAAATTCCCAGAGTTGTCTTTACCTAAAGATTTCTCG
GAATTTGTCGAGATGACAGTTTCATTAGCTTCATCCTTCAAACAGGCTGTAATGCCACCA
CCCAAGGAGGTTCCAGAAGTTTCTAAATCATCAGAGAAAGCTGAATAGTGTCTTAAGCTA
TCATCACAAGATGGGACATCTTGTTAGTGAAAATATTTATGGCAATAAATTAATTTAGCC
AATATGGCTAACTGTTACAGTGATAATAAACGGACATTAAAATAAATAAATGAAATATTT
AATTATTGTTTTTATTTCTTGAAATATATACGATTTTTAATTAAAACTACATTCTTTTGA
TTCTAAAAGTGGATGTTTAAAATGTGTTAGCAACTGTAGACTTTATAACTTGCTGGCGAC
CATGATGGTAATTTACCTATTGCTTATTATTTTAGACTATAACTAGGATTGTCAAGCGAA
TATCATCTCTTCACGTCTCTTCTTTGTTACGACTGTCCCTGGCTTATGTTGAGCCTCAGG
GTGGTTCATTAGTTCCGGTGGACACGTAGATACGGAACTTGCCAACAAAACCTGCTTCAG
ATCATAGAACAATGCGGAGTCTTCTTTTGTAACAAAGGACATAGCTTTACCAGTTTTTCC
TGCACGACCGGTACGGCCGATACGATGAGTGTAGTCTTCAATAGTTTTCGCCATATCGTA
ATTAATGACCATACTGACATCTTTAATGTCAATACCACGACCTGCCACGTCTGTCGCCAC
GAGGATATCTTTAGCGCCCCCTTTGAGACTGGCAAGTGCAAAGTCACGTTGTTCTTGGCC
TTTACCACCATGCAGCGTACAGGCATTGAAACCAAGTTTTTCTAGTCCCTTTGCAAGAAC
ATCTGCACCTTTTTTCTGGTTAACAAAAATAATAATGGGTGGTTCGACACCACGCTGCAA
AATCTCTGTAAGTTTTCTACGTTTTTCATTCTCGCCTATCATGTAGACTATTTGTTCAGT
TCTGTCTACTGGTTTTCCTACAGATCCAATATATACAATAGCCGGTCTTCTGAGATAACT
TCTAGCCAGCCGCTCTACAGCCGGAGGCATTGTTGCCGTAAACATCACAGTTTGTCGGTA
TTTCTTTTTTGTGTTATAATTGGCAAGCAATACTGAAGCATCTTCAGCTGCATCACTATC
AGGTTTTATGTTCGATACAGGCATGTATTCCAGGATTTTTTGAACATCTGGTTCAAAACC
CATATCAATCATCCGATCAGCTTCATCAAGAACAACATAGGTACAACGGTTTAGTACTAA
ATATCTGTTGTCTAAGACATCAATAAGACGACCGGGAGTGGCAATGACAATCTCACAGCC
TAACCTCAGCTTAAAACCTTGTTCTTCACGAGATAAACCTCCAACAACCACTACTGATGT
GATACCAAGAGGAATACCAAATTTATTAGTTTCTTCTTCAATTTGTTGAGCCAATTCACG
TGTTGGAGCTAAAATTATAGCATAAGGTCCTTGGTCAGCATCTTCCATACGTTCACTCTT
CGGCAGAGATTGAATCCATGTAAGTAATGGTATAAGGAATGCCAATGTTTTACCGGAACC
AGTTTCAGCAACACCAATAATGTCACGGTTCTGTAATCCAATTGGAATAGCCTGCCTTTG
AATAGGAGTTGGGCTCTTATATCCAACTTTGTTGATTATGTCCATAATGTCAGTATGCAA
GGGAGCTTCCTTCCAAGAACGTATAGGGTTAGGAATTTTACCTCCTTTTAAGGTAATATT
GTAGTCTTCCCTGAATATCCTCCAATCACGCTCTGTCATCTCATCCACATCCTTCTCAGA
CCAGTGTCTATCATCCCACTTTTGTTTGTCTTCCTTCTTCTTCACTTTCTTCAAGCGTAG
TTTTTCTTGTTCTTTCTCTAACTCAGTTCTGCGCTTTTCTAAAAGATTCCCATAAAATTT
GCTATGGTCTTTCTTTTGAGACTTTATATCTATACCAGCAATGTGTCCACGACCAAAGAA
TTGTACTTGATGTCTTTCTTTGTACAAAACATTATAATCATTTGATGTATCTTCTGACGC
ATCCCAGTCAAAAACAAATTTCCTGTCATTCAGCCGTCTTACTCTACGCTTTTTCTTTAC
TATACCTAAGTAACGAGCTTTAATAGCCTCTTCTTCTCTTTCTTTATCTTTTGTTTTAGA
TGTCTCTTCATTATCTTTTTTTGGTTCTCGACGATCTGAATAGGCTTTCCTCTCTTCATA
TTTCCTTTCCCGTTCCTCTCGACGTTCCTTTTCTCTATCTTTTTCACGTTCTTCTCTGTG
CCTTTTATCTTCTTCACGTCTTGACGGACCTGTTAAATCAATAGTGACTTGAGGCTTATC
AGTATTAGCTCTTATAGCTTCTACTTCTTGACGCCGTTTCTCCAAAGCTATCTGTGCTCG
TTGCTCTTTGGTAAGAAATACTGGCTTACTGCGGGCTTCTTCCTCAGCCTTTTTCTTAGC
AAGTAGTTCTTCTAAGGACAAAGGCTCTTTTTTAATTGGTTTTTTATCTATGGATTCATC
CTCTTTCTTCATGTCTGCAGTGTCTTCCTCCATTTCATCTTCTTTTTTTGATCTACTCTT
TTCCTTGTCTTCGTAACGTCGATCTTTGTCTTTGCCGTCACGTTTCTTAGGGCTGCGCGA
ACGACCGCGTTCTTTACGTAGCGGACTCCTGGAACGATCGCGATCTTTTCTAGAAGGGCT
TCGAACTTTATCCGCATCTTTTTTAGGGCTTTTAGACCTGTCCCTGCGCTTTACTTTTTC
ACGATATGATTCGCGTTCATCGTAACGATCCCGATCTCTTCTATCTCGTGATCTTGACCT
CCGCCGTTCAGGACTTCTGTCTCTGGCCATTTTTGGTTTATGGAACCACCGGTTATTATT
TTATTAAAATCTCTTTACAGCAAATACAATAAAATTGTGTAAATTCTGTGTATTTTTCAC
GTACAAAATGTAGCAGTATGTGAACAACTTCAA
(6093 bp) |
