| Name | A_BomaMG_comp24936_c0_seq1 |
| Scaffold_id | |
NCBI non-redundant
(nr) | PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX23_[Amyelois_transitella] |
| Ontology |
| GO:0000166 |
F |
nucleotide binding |
| GO:0000354 |
P |
cis assembly of pre-catalytic spliceosome |
| GO:0000375 |
P |
RNA splicing, via transesterification reactions |
| GO:0000398 |
P |
mRNA splicing, via spliceosome |
| GO:0003676 |
F |
nucleic acid binding |
| GO:0004004 |
F |
RNA helicase activity |
| GO:0004386 |
F |
helicase activity |
| GO:0005515 |
F |
protein binding |
| GO:0005524 |
F |
ATP binding |
| GO:0005634 |
C |
nucleus |
| GO:0005654 |
C |
nucleoplasm |
| GO:0005681 |
C |
spliceosomal complex |
| GO:0005682 |
C |
U5 snRNP |
| GO:0005730 |
C |
nucleolus |
| GO:0006397 |
P |
mRNA processing |
| GO:0008026 |
F |
helicase activity |
| GO:0008380 |
P |
RNA splicing |
| GO:0010501 |
P |
RNA secondary structure unwinding |
| GO:0016787 |
F |
hydrolase activity |
| GO:0044822 |
F |
RNA binding |
| GO:0070062 |
C |
extracellular exosome |
| GO:0071013 |
C |
catalytic step 2 spliceosome |
|
Transcript
Level | FPKM:1.13 TPM:1.05 |
| ORF Entry | |
Sequence
(Nucleotide) | TTTATAGGTTTTCCACGTATTTAAAATTGTTCAGCTCCAATGCCCTGGGCGTCATGCATT
TGGAGGTTATGGCGTATTTCACCTGTTTCAAATTCCTTGTAGATTTTGCCTAATTTACAT
TTGAAATTGGAAGCCTTGTAATTTAATGAAATAATAAACCATAATATTACAAAAGGTCGG
GGTTCAAATAAATCCGTCAGTATAAATGTATAGAATATTAACCTCACACTTTTTAAGGAT
AATGTAGACGAATTTATGAAATCACCGATCAATGCTGAAGGAGTCGATGTAGTTTTGAAG
AGTCTAGATGAAAAGCACCGTAAGTATAAGGTGATGGAATACACGTTGGCTACTAAAAGA
AGGCGATTACGGCAACAAATCCCAGACTTAGCGCGGACAATTGAAGTAATTGAAAAATTA
AAAGAACAAAAAGAGGAAGTAGAAACACAGTTCCTTCTTAGTGATCAAGTATTCGTGAAG
GCTAATGTACCACCAACAAAGTCAGTATGTTTGTGGCTTGGAGCTAATGTAATGTTGGAG
TATAGTCTTGAAGATGCTGAAAAATTACTGACTACAAATATGGAAACAGCTCAAGAAAAT
TTAAATCAAGTAGAACATGATTTGGATTTCTTAAGAGATCAGTGTACCACTACCGAAGTG
AATATGGCTAGAGTTTACAACTGGGATGTGAAGAAACGCCAGGCAGCTTCTGGTCGCATT
ACCGCTTGTTAAGTTTAACAACAACTGAATGTGTTGACTGCTCCAGTATAATAGATTCAT
TATGAATACAAAACACATTTGCAAGTATGCAATGTCATGAGGAACTACTACAGCAATGTC
TAAATGAGTAACATATTTATAAAATTGATATTAACCCTTAATCAAACACGGAACTTTTTG
TGAGATAAATTAAAAGTAAGGTTGGTTTTTAAGTAAAATAGGTCCGTAGATTCCAAAAAT
CTTAGTGGAATTTCGAAAAAGTGGAGGGAAGGGGGTGTTTTTCGGTGGGAAATTATTTCC
CCTTATTCGTATTCGCAAACACAAAAATCGCCAAATGGGAAAATAGTTCCCGTTATCCGT
TACCACTTAAGATTGTTTTGGAGTATTTTTTAGACTAGTTAGTACCTCGGATTTGCCACA
GATTTTTGTAAATATTTTTTTTTTAGACAATAAAAAACAATAATTATTCAGAAATATTTC
ATTACTTACTAAGCTTTACAAAGATACAATTAATAATAAGTACTCTTATACGTATAACAT
ATATACTATGTTTGGATGAGATCTTTGTCCAGCAGTGGGACAATAATAGGAAAGAAAAAA
ACACAAAATAGGTTAGATAAATTACTGAGAAGGAGCAGCGTGAAAAGATTTAAAGCATAT
TTTGGCACACAGGGCTACTTGACACGTTGAACACTGTATATTGGTCCTCTTTTCTATTTT
TTTCGTGCTACAAAACCTGCATCTCTTATAAGTTTGTATTACGTCCGGCATGTGAATACC
CACATTCATCAGACGGATTTCATCCGGCACTCCGAAAACTCCACCTTTTTTGTTTTTATA
AACGACACTTTGGATGTTTTCTTTTCTGGTGGTGTAGCTATTGATCAGTGAACGTGCTAA
ACGCAACCTGAATTCGCGATGTCCATGCAGCGTTGGTATATGTGTATGATTGTAGGTGAT
ATACGCATTTATTATTGAGGCGTCAAAAAAGAAAAACAAAAGTCTCATCCAGTACTTCCT
TGACTTTCTGTCTGAGCATCTGGTTGGTCTAGGTGTACAGAAGGAGAATGGATACTATTT
TCGTAACAAGGATCGTCTTCTTCATCGCATTCGGACAAATCTGAAAGATCCGCTAAATTT
TCTATGCATATTTCGAGTTCTTTCTTTGAGAGTGGTATTTTATTTATTTTTTCCATTTTG
AAATAGCTGAAAATCATAAAAAATCATATATAATAACAAAATAAAAAAACCAAAACATAC
AAAGTGATTCCCATTGGACAGATAAACATTTTATATATATAGTTTGAATTTTTTCATGTC
AGTAACAGACAAGGGGAAATAAATTCCCACATTTTAAATAGTATATTTTTCCGTCAAATT
ATAACGTTATCAATGTTATTTTACAGCCAAAACCTTGAAAAATGAGTCTAGTTTAAGTTG
ACAATAAGTTCATGTACTTACCAGATTTTTTTCTTAACAATTTCCAAAAAAATAACGTTG
CACTCCGACCACTTTCAAAAAAACGGGCAATTTTTGACTTTGACATTAGCTCACGGCGAC
ATAAACTAACCGTCACTAAAGTGCTGCCAAACAAAAAAAAAAGAATTACATCCGAGATTT
ATTTTGTTAAGACTGGTATTGGTCAATGTTGCTGTTTATGAAAAAACAAAGATTTTTGGA
GGTGGGAAAATACTTCCCGTTATTTGATTAAGGGTTAAAGTGTTTATATAATTATACGAG
TATTATGGATTAATACTTTTGGGTTTAATGATGCTTAGAAAAGTGGTGATAAGTTCTATG
GGGGCTATTGCTTTGGTTCCGGTTATCAAAGCGGCCGCCCCTATCAACGAGGAATCAAAT
GGTCCCGCGAAGCCTCCACCCATGCGGGTATCGGAACTACCATTATATGAAACTCCACAT
GCCGATTATGCTGAGTATCTTGAAGCCAAAGCCCATGAGCAGAAGACAAGCTACCTAAAA
TCAGCATTATTACCTCCAGTACGTGCTCTTAGAGAACAAGTGCAAACATTTGTAGATCAG
ACAGATTTCATCAAACACTCCATTCAGGATAACTACCACGAATTCCAAGATAAGTCAGAA
TGGATCTTTAAGTATTTGCGCGAGGAAGAAAATGAAGAAGTAAGATATGGAGCTGTTGCA
ATGGGTGGTCTCACAGGCTTCATATTTGGACTCAGGGGTGGATTTATTAGGAGAATAATA
TATGCTGGTGCGGGTACCACAGCAATGGGACTAGTTTGTTTCCCTGAAGATACTAAGGAA
ATTTACAAGAACAATTCTGTCCTAGCTAAGCAGTACATCAACATTGCATATAATTTCTTA
TATGGAGTGAAACCAGGCGATCCACAGCTAGAAGTGAAATTCCCAGAGTTGTCTTTACCT
AAAGATTTCTCGGAATTTGTCGAGATGACAGTTTCATTAGCTTCATCCTTCAAACAGGCT
GTAATGCCACCACCCAAGGAGGTTCCAGAAGTTTCTAAATCATCAGAGAAAGCTGAATAG
TGTCTTAAGCTATCATCACAAGATGGGACATCTTGTTAGTGAAAATATTTATGGCAATAA
ATTAATTTAGCCAATATGGCTAACTGTTACAGTGATAATAAACGGACATTAAAATAAATA
AATGAAATATTTAATTATTGTTTTTATTTCTTGAAATATATACGATTTTTAATTAAAACT
ACATTCTTTTGATTCTAAAAGTGGATGTTTAAAATGTGTTAGCAACTGTAGACTTTATAA
CTTGCTGGCGACCATGATGGTAATTTACCTATTGCTTATTATTTTAGACTATAACTAGGA
TTGTCAAGCGAATATCATCTCTTCACGTCTCTTCTTTGTTACGACTGTCCCTGGCTTATG
TTGAGCCTCAGGGTGGTTCATTAGTTCCGGTGGACACGTAGATACGGAACTTGCCAACAA
AACCTGCTTCAGATCATAGAACAATGCGGAGTCTTCTTTTGTAACAAAGGACATAGCTTT
ACCAGTTTTTCCTGCACGACCGGTACGGCCGATACGATGAGTGTAGTCTTCAATAGTTTT
CGCCATATCGTAATTAATGACCATACTGACATCTTTAATGTCAATACCACGACCTGCCAC
GTCTGTCGCCACGAGGATATCTTTAGCGCCCCCTTTGAGACTGGCAAGTGCAAAGTCACG
TTGTTCTTGGCCTTTACCACCATGCAGCGTACAGGCATTGAAACCAAGTTTTTCTAGTCC
CTTTGCAAGAACATCTGCACCTTTTTTCTGGTTAACAAAAATAATAATGGGTGGTTCGAC
ACCACGCTGCAAAATCTCTGTAAGTTTTCTACGTTTTTCATTCTCGCCTATCATGTAGAC
TATTTGTTCAGTTCTGTCTACTGGTTTTCCTACAGATCCAATATATACAATAGCCGGTCT
TCTGAGATAACTTCTAGCCAGCCGCTCTACAGCCGGAGGCATTGTTGCCGTAAACATCAC
AGTTTGTCGGTATTTCTTTTTTGTGTTATAATTGGCAAGCAATACTGAAGCATCTTCAGC
TGCATCACTATCAGGTTTTATGTTCGATACAGGCATGTATTCCAGGATTTTTTGAACATC
TGGTTCAAAACCCATATCAATCATCCGATCAGCTTCATCAAGAACAACATAGGTACAACG
GTTTAGTACTAAATATCTGTTGTCTAAGACATCAATAAGACGACCGGGAGTGGCAATGAC
AATCTCACAGCCTAACCTCAGCTTAAAACCTTGTTCTTCACGAGATAAACCTCCAACAAC
CACTACTGATGTGATACCAAGAGGAATACCAAATTTATTAGTTTCTTCTTCAATTTGTTG
AGCCAATTCACGTGTTGGAGCTAAAATTATAGCATAAGGTCCTTGGTCAGCATCTTCCAT
ACGTTCACTCTTCGGCAGAGATTGAATCCATGTAAGTAATGGTATAAGGAATGCCAATGT
TTTACCGGAACCAGTTTCAGCAACACCAATAATGTCACGGTTCTGTAATCCAATTGGAAT
AGCCTGCCTTTGAATAGGAGTTGGGCTCTTATATCCAACTTTGTTGATTATGTCCATAAT
GTCAGTATGCAAGGGAGCTTCCTTCCAAGAACGTATAGGGTTAGGAATTTTACCTCCTTT
TAAGGTAATATTGTAGTCTTCCCTGAATATCCTCCAATCACGCTCTGTCATCTCATCCAC
ATCCTTCTCAGACCAGTGTCTATCATCCCACTTTTGTTTGTCTTCCTTCTTCTTCACTTT
CTTCAAGCGTAGTTTTTCTTGTTCTTTCTCTAACTCAGTTCTGCGCTTTTCTAAAAGATT
CCCATAAAATTTGCTATGGTCTTTCTTTTGAGACTTTATATCTATACCAGCAATGTGTCC
ACGACCAAAGAATTGTACTTGATGTCTTTCTTTGTACAAAACATTATAATCATTTGATGT
ATCTTCTGACGCATCCCAGTCAAAAACAAATTTCCTGTCATTCAGCCGTCTTACTCTACG
CTTTTTCTTTACTATACCTAAGTAACGAGCTTTAATAGCCTCTTCTTCTCTTTCTTTATC
TTTTGTTTTAGATGTCTCTTCATTATCTTTTTTTGGTTCTCGACGATCTGAATAGGCTTT
CCTCTCTTCATATTTCCTTTCCCGTTCCTCTCGACGTTCCTTTTCTCTATCTTTTTCACG
TTCTTCTCTGTGCCTTTTATCTTCTTCACGTCTTGACGGACCTGTTAAATCAATAGTGAC
TTGAGGCTTATCAGTATTAGCTCTTATAGCTTCTACTTCTTGACGCCGTTTCTCCAAAGC
TATCTGTGCTCGTTGCTCTTTGGTAAGAAATACTGGCTTACTGCGGGCTTCTTCCTCAGC
CTTTTTCTTAGCAAGTAGTTCTTCTAAGGACAAAGGCTCTTTTTTAATTGGTTTTTTATC
TATGGATTCATCCTCTTTCTTCATGTCTGCAGTGTCTTCCTCCATTTCATCTTCTTTTTT
TGATCTACTCTTTTCCTTGTCTTCGTAACGTCGATCTTTGTCTTTGCCGTCACGTTTCTT
AGGGCTGCGCGAACGACCGCGTTCTTTACGTAGCGGACTCCTGGAACGATCGCGATCTTT
TCTAGAAGGGCTTCGAACTTTATCCGCATCTTTTTTAGGGCTTTTAGACCTGTCCCTGCG
CTTTACTTTTTCACGATATGATTCGCGTTCATCGTAACGATCCCGATCTCTTCTATCTCG
TGATCTTGACCTCCGCCGTTCAGGACTTCTGTCTCTGGCCATTTTTGGTTTATGGAACCA
CCGGTTATTATTTTATTAAAATCTCTTTACAGCAAATACAATAAAATTGTGTAAATTCTG
TGTATTTTTCACGTACAAAATGTAGCAGTATGTGAACAACTTCAA
(6105 bp) |
