| Name | A_BomaMG_comp24633_c0_seq1 |
| Scaffold_id | |
NCBI non-redundant
(nr) | putative_nonsense-mediated_mrna_decay_protein_1_[Danaus_plexippus] |
| Ontology |
| GO:0000166 |
F |
nucleotide binding |
| GO:0000184 |
P |
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
| GO:0003677 |
F |
DNA binding |
| GO:0004386 |
F |
helicase activity |
| GO:0005524 |
F |
ATP binding |
| GO:0005737 |
C |
cytoplasm |
| GO:0008270 |
F |
zinc ion binding |
| GO:0016246 |
P |
RNA interference |
| GO:0016787 |
F |
hydrolase activity |
| GO:0035145 |
C |
exon-exon junction complex |
| GO:0035195 |
P |
gene silencing by miRNA |
| GO:0046872 |
F |
metal ion binding |
| GO:0071456 |
P |
cellular response to hypoxia |
| GO:2000624 |
P |
positive regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
|
Transcript
Level | FPKM:7.19 TPM:6.66 |
| ORF Entry | |
Sequence
(Nucleotide) | AATTTATATAAAACTTTATACGGAAACAAACCATGTGTTAACATGTCGAATTTTCGTCAC
GATTTGTGTGTCGTTTGAATAACTGCGTGACTGCTATGGAAATATCAGCCAATAGTCGTT
CTATATATTTTCTTTTGGATTAATTTTGTTTGTTTAAATTCGTCATTAAAAATGAGTGTT
GAAGCATTCGACCCAAGCTCGCAATCGCTCACGTTTCTGGAAACAGAGGAAGGGGACTTT
ATTGGAGCAGACACTCAAGGCTCTGAGTTTGAGTTCACGGATTTTACATTACCCTCTCAG
AGCCAGACACAGGCTTCACAACATGACCATGGGTTGTCTTCATCCAACCAGGTTAACGGA
ATAGGACGTGTAGAATTGTCGTCTAAAATCTCTAACGTGACTAATACGATACCGGAGCTG
CAATTCGAAGAGGAAGATGAGGCTTTGTACAGCAACAAGGAACTTCCAGATCATGCTTGT
AAATACTGTGGCATACACGACCCGGCCACAGTCGTTATGTGTAACATATGCAACAAGTGG
TTCTGTAATGGCCGCGGTAACACTTCAGGCTCTCATATCATCAACCATTTAGTACGTGCA
AAGCACAAGGAAGCTGCATTGCACCGTGACGGGCCACTTGGCGAAACACTTCTGGAATGT
TACTCATGTGGTGCTCGGAATGTATTCGTACTTGGCTTTATACCAGCTAAAGCTGATTCT
GTTGTTGTGCTACTTTGCCGACAACCGTGTGCAGCTCAAAGCTCTTTGAAGGATATGAAC
TGGGATCAGGAACAGTGGAAACCTCTGATATCTGATCGTGCCTTCCTGTCTTGGTTGGTG
AAAGTGCCATCAGAAACAGAACAAATGCGAGCTAGACAAGTAACTCCACAGCAAATAGGC
CGCTTAGAAGAGTTATGGCGTGACAATGTGGATGCTACTTTCCAAGATTTAGAAAAACCA
GGAGTAGATGAGGAACCACATCAGGTTTTGCTGAGGTATGAAGATGGGTACCAATACCAA
AACATATTTGGTCCTCTTGTAAAGCTGGAGGCAGACTATGACAAGAGACTGAAAGAATCA
CAAACACAAGAGGGTATTGAAGTTCGTTGGGATGTTGGTCTGAACAAAAAGACTATTGCC
TACTTCACATTGGCTAAAACTGATAGCGATATGAAGTTAATGCACGGCGATGAATTGAGA
TTGAGATATGTTGGTGAGATGCATAAAGCATGGTCAGGTGTCGGTCATGTCATAAAGGTC
CCAGATAACTATGGTGATGATGTTGGACTCGAACTGAAGAGCGGTGCTGGGGCCCCTCTA
GATTGCACTTCTAATTTTGTTGTTGATTTCATCTGGAAGAGCACTTCTTTCGACAGAATG
CAACTGGCACTACGTAAATTCGCCTTAGATGATTCTTCAGTGTCTGGTTATATATATCGG
CGTCTGTTAGGCCACGAAGTTGAGGAAGTGCTGTTTCGAGTACATCTTCCAAAGCATTTC
AGTGCTCCTAATTTGCCAGACCTTAACAGATCTCAGGTGTACGCAGTTAAGCATGCTCTT
CAGCGTCCCCTGTCTCTGATCCAAGGTCCTCCGGGAACCGGTAAGACTGTCACATCCGCT
ACTATAGTGTATCAGCTCGTCCGGCAAAACGGTGGACCAGTATTAGTTTGTGCACCTTCG
AACACCGCCGTCGATCAACTAACTGAAAAGATACACCGGACTGGACTCAAGGTGGTCCGA
TTGTGTGCCAAGTCGCGAGAGGCAATGGAGTCTTCCGTATCGTTCTTGGCACTTCACGAA
CAAGCTCGCGCTCTCGGTTCTGCTGATAGCGAACTTCGGAAACTTACTAGACTCAAGGAG
GAAGCCGGTGAACTTTCTGCTGCCGATGAAAGGCGATATCGTTCGTTGCGCCGCGCCGCT
GAGAGACGCTTACTGGACGCTGCGGATGTCATATGCACCACGTGCGTAGGCGCCGGGGAC
CCTCGCGTTGCTCGTATGAGATTCCAGTCCATTTTGATCGATGAAGGCATGCAGTCGACG
GAGCCAGAATGTATGGTGCCTGTAGTTCTAGGAGCCAGACAGTTGATTCTAGTCGGTGAT
CACTGTCAACTCGGTCCCGTGGTAATGTGTAAGAAAGCTGCAAAAGCCGGTCTCAGCCAG
AGTCTTTTTGAACGTTTGGTCGTCCTCGGGATCCGTCCGTTCCGACTCGAAGTACAGTAC
CGCATGCATCCTGAACTTTCACGTTTTCCTTCAGACTTCTTTTACGAAGGGTCCTTGCAG
AACGGAGTCAGCGCCGAAGAAAGGCGTTTACACAAAATCGATTTTCCGTGGCCCAGACCT
GACAGGCCCATGTTCTTTTACGTCACTCAGGGACAAGAAGAGATCGCCGGCTCCGGAACT
TCGTACTTAAACAGAACTGAAGCTGCGAATGTTGAAAAACTCACAACACGGTTCTTAAAA
GCAGGCGTCCGTCCCGAGCAGATCGGTATAATAACACCTTATGAGGGACAACGATCCTAT
CTTGTGCAGCACATGCAGTACCAGGGCAGTCTACATGCTAAACTGTACCAAGAGATCGAG
GTTGCCAGCGTCGATGCCTTCCAAGGGAGGGAAAAAGACATCATAATTATGTCTTGCGTG
CGGTCCAACGAACACCAAGGAATTGGCTTCTTGAGCGATCCGCGACGTCTTAACGTCGCT
CTCACGCGCGCCAAATACGGCCTCATCGTCGTCGGCAATCCGAAAGTGCTCAGTAAACAG
CCGCTCTGGAATCACTTGCTCGCTTTCTACAAAGAGCGCCGTGTACTTACCGAAGGACCG
CTTTCGAATCTGAAAGAATCCGCCATTCAGTTCGCAAAACCAAAGAAGCTGGTGAACTCT
CAGAATCCTGGCTCCCATTTCATGTCCACCTCGATGTTCGACGCGCGCGAAGCCATGGTA
CCGGGCTCCATCTATGACCGAGCGCGGCCTCCGCGGGACCCGCTGGCGTACGTGGGGCCG
GAGCGCGG
(3008 bp) |
