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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp24416_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		retroelement_polyprotein_[Lasius_niger]
Ontology
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:7.25 TPM:6.71
ORF Entry
Sequence
(Nucleotide)
ATGGCTGGAGAGGTTTTTAAGCCAAATGGCAAGCAGGTCCACTGATAATGTCCCTCCTGC
GTCACAAATGCGGTCTTGTGTCTATCTGTGATACGCAGGGGTATTGACCAAAATGCTGAA
TTTAGGTCCAGTGTTGAGAAGAATTTGCAATCTCTTGTCTTTAGTATTAGGTCTTCAATA
AGAGGGAATGGCTGAGATTGAGGCACAACTATTTTATTTAAGTCTCGAAAATCGATGCAT
AATCTTGATCTTTTATGCTCATCTCTTTTATAAGCTAATGTAACTGGTGCTGCGAATGGG
CTATATGATTCTTCTATTATATTTTTTTCCAATAATTTTGCAATTTGGTCTTCAATCTCC
TTCTTGTCTTCTATTGTGCAACGATATGGCCTCTTGAAACAATATTTTTCTATTAGTAAA
TCAATGTGTGCCTCATAATCCGTTACCTGTCCTATGTCATATTTGTCCTTCGCAAACACA
GATTTATTTTCTGAAATTAATTCATCAATCGCTGACTGTTTTTGATAGTCTAGATGATTT
ATACAAATGTTGAAATCTTCTTCATGTATGTCTTCATTGAAGTTTATTAAATTATCAGAT
TTTATCTCCTTAGAAATTATATCTGTTTTGTTTGTTTCCTTAGAAACTATTTCTCTTCTT
TGTATGGGTAATTTCTGTGTAATTTCCAAGTTTTCGTTTTGTACTAGGTAAAACCCTTTT
ATACAATCAAGTCCCACTAAAAAGTCGTAATCGAAATTTTCCTTGTCTATTACAAAAACA
TTCATTTTTTTTTCCATATCAAAGATGGCTATATCAAGTGTTATTATGCCATTTGCCTTT
TTAACGCCATTAATCGTTTTTAAATTAGTATTGAGAGAGTTGGGGTGACTGGCTTCCTTA
TTATTTATTTTTAACAATCTTGAATTTATTAAAGAGACATTGGACCCTGAGTCATAGATC
CCAGCAACTTCAACATTTTTATTGAGTACTAATTTCACTTTGATCAATGGCGGCACTATT
AGTTTTTTTGATCTTCATACTGTAGTTCACATTCTAATTCTGAATTGTTGATAAGCTTTA
TTTGCTTTTTATCTTTTTCAGTATTTAAATTTGTTTTAAACCAGCAAGAGTCCTCTGAAT
GGTAGCGTACCCCTTTCTTTAGTTTTTCACAAATACTACATTTTTTCTTCTCTGGCTTAG
TATCCTCTTTCTTCTTGATAAATTTTCTTTTTGAAACTAAATGTTCTAATCTTCCAAGTT
CACTAAATAAATTTTTTGTATGTACAATTTGTTCTTTTTCAATTCTATCTGTAATAAAAT
CTGGTAAACCGGCAGCTATTATATCAATAAGAGTCCCTTCATCTATTGTTTTTCTTACTT
CAAGTAAAAGTTTTTCTTTCCTTACTGCATATTCTAACAAAGACCCCGATTGATACTTGT
AAAATAAAGCATACTTGCTAGCAGTCCAACCTTTGTTCGCATAGGTTTGCAAAAAACTTG
ATTTCCATTCCGACCACTCAGGATCTAAGCCGAGCTTGATCATCATGGACGAATACCAAT
CAGTGCATGATTTCTCAAGAAATAATCTGAAGATTTCAATTTTTTCTTCTTCTTTTACTA
TATCAAACCTTGCACATTCATTTTCAAATATTTCCATCCACTGACATGCACTTGAACTTT
TCCCATCAAATTTTTCAATGACAAACCTGTCAGCTAACTTTTTAATACTTTGTTTTTCTT
TGTTTTGTTGACTTTCAACTAATTTTTCCAAAATCTTCACTATAGGGTCTTCTAAACGCT
TTTTACTACCAGTAGCCATTTGTTCTTGGGTAATTTCCTCTAAAAATTGATCCTGAAAGA
TCATGTTTCCATCCTCATCAAGATATGTTTGTAATATCTCTTCTGTTGTTTTTATCCAAA
CACTTCTAGTTTGATATCTTTTTTTCAATGTATTTTTCACAGTAAAGAAGGTTTTCGAGG
TTTGGATATGTTTGTGAAGTGATATTGCTTGATATTCTTCAGGCATAAGGAAAACTTTGT
CATCTTTCGTGGCAATTGCGGTTATGGCGATATAGTTCGACTTTCCGTCTATTGATGGTT
TCGTTTCAAACGTAAACTTTAACTTTTCCATTTTCTTGACAGTAAATGTCGTTTTATAAG
GTAATTTCCAATATGTTTGTGATTAGAACGACACAGTCAGTCAAACACAATTGAGTTTCT
CTGTAATAAAAGAAACGACATTTAATGTTATTATTAACAATGTCAGTTCCTGAATCACAA
TTAAGTAGTATTTTAAACTTTAAATATTAATTTATTAACGATCACGAGTCTCATGCGTTT
TAGGTTATCTTTTCCATAGCTAATTAAATTCATTGATTTGTCATGTCACTCATTCGATGA
TGATTGATGCGCGGGAAATTGAATTAAAGAAAATTATATTTTTTCTTTACATCTCCCCCC
GTAAAGAAGATAGGATGAAGATGTCAGCTCATGCACGGTCATCAATCGTAGGCAGGAGCT
GGTGTTAGCTGTGAAATGTGGAAAAAGTTCGACTCTGATCTCTTATGGTCAGTGTTTATC
TTGTAAATTGAGTTTGAAATTTTTTCTATAATTCTGTATGGTCCAAGTTTCAGTTCATCA
AGTTTCTTCCGATTCAGCTTGTGTCCATTCTCTACAAAAACAGTATCACCAACTTTGAAG
TCCATATGTTTTCTATTTTTATCGTAAATTGTCTTGTTATAATTGTGTGATCTGATTGTA
TTTTCCAGAGCGTTTTTCTTGGCCAGGATTAAATCATGGTCAGTCTTCTTTTGTTTCAGG
TCATTTGGCAAAATCCTAACATCTGTGCCATAAAGTAGATACTTGGGAGCATATCCAGTA
ACAGTGTGCTCTGTTTCATTGTATTTTTGTACACAGTTGTGGGCTACAGTTGTCCATGCT
CTTTTTGTGTCATGTTCATTTATTTTGCACCTGATTTTATTGACCAAAGTCTGATTCAAT
CTCTCGTTTAGGCCATTCGAAAAAGGAGAGTTCACTGCTGTAAAAATTATGGGAATATTT
TTTTCATCCAAAAATCTCTTGAATTCCTTAGAATGTATACCTGGGTATTGGTCTGACAGT
AACAATTCAATGTCATCACTTTCTGTACAGTTTCTTATTAGTTTGATGAAATCATTAGCA
TTTTGAGTACTTGATGTGAGAATATATGCATATCTGGTGAAATGATCTAATAAAAGATGC
AAATATTTCTTTGTTGATCTGGAACCTCCGAATCCTCCAATGGTATCAATAGAGCAGATC
TGAAAAGGTTTTGTGGCAGGACCCAAGTGGGACATCAACCCATATTGAATTTGTCCCCTT
GATTTGTTCTTTAAACATACTGTACAACTCTCACAGATTTTTTTTATGTTTTTAATCATA
TTTTCTGATGTATACACTGAGCTTATCATTCTCTGCATCTGTTTAATTCCTATATGACCC
AGATCTGTATGTACACTTTTCATAAAGTTCATGCTGAATTCCTCAGACAATATAATTTTT
TCTTTTTTCTTTACTTTTTTGTAGTAAACATTTTGTTTCTTTATTAATTTGTCTTTTCTG
CACTGTATATATTTATTTTCTATTTGATCTTTTAGGATATCTTCTAGTGTTATTATGTTA
ACTACTTTTAACTGCTCCTGTAGGTTTTCATTTGGTTCAAGGACCGGGTTTCTGCTTAGG
CAATCAGCTTCAATATTGTATTTTCCTGGAGAATATTTAATTTGGAAATCATATTGTGAT
AGGTAGTATGTTAGATCTCCTAATTCTTCGTCTGTTCTAGATCTTATGTTCATATTCTCC
AGAGGCTTGTGATCTGAAAATACAGTGAAATTCCGACCTATTAATAGATGTTGCCAATAC
TTTACACATTCTTTAATTGCCAGGCATTCCAGATAGATAGCTTTCTTCCTTTTTTGTACT
TCATTCAATTTTTTTGAAAAGTATGCTACTGGTTTTTCTTCGTTGTTGTTTTGTGTCTGT
TTTAATACTGCACCTACTCCTAGTATACTAGCATCTGTGTATATGTGAATAGGGAGGTTT
GGGTCAAAGATAGTTAATATTGGTTGAGAACACAATATTTGTTTCATTTCATTAAACGAC
TCCTGGCATGCATCGGTCCAGTTAAAGGGTTGTCCTTTTCTCAAAAGTTTATGTAATGGT
TCCAATTTTATGGCTATGTTTGGCACATACTTATGATAAAAGTTTATTTTTCCTAGGAAT
TGCCTCACATTCTTTTGAGTTTTCGGAGTAGGGAAATTTTGTATTGATATTAAGTTATCA
TTCAGTGGTCTGACTGAATTATTCTGTATTACATGACCCAAATATTTAACTGTATCTGCT
GCAAATGTGCATTTAGAGAATTTTAGTTTTAAACCTTCACTTTTAATTGCTTGAAAGAGT
TTTTCTAGATGTCTGATATGATCAGAGAAATCTTTAGAAAACAATAAAATATCGTCGATG
AAACATACAGCAAAATCTCCAAGCTTGTGTTTCCGTATTATATTACACATTATTCTCTGG
AAT
(4563 bp)

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