SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp24185_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_DNA-directed_RNA_polymerase_II_subunit_RPB7_[Bombyx_mori]
Ontology
GO:0000291 P nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003697 F single-stranded DNA binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006915 P apoptotic process
GO:0031369 F translation initiation factor binding
GO:0045948 P positive regulation of translational initiation
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
Transcript
Level		FPKM:12.23 TPM:11.33
ORF Entry
Sequence
(Nucleotide)
AAATTTGAAATTTAGCATGCAGTCTTGAGAGTTGATGCTGTTTATGTATATTTCTAAAAA
ATAAGAATAAAACAAATCTAGTTGAATGGAATACTAATCGTAATTTGTCCACCGCTGAAA
AATGTTCTACCACATTTCATTGGAGCACGAAATTTTGTTACATCCGAAATATTTCGGTCC
ACAACTATTGGAGACAGTCAAACAAAAGCTATACACTGATGTGGAAGGCACCTGTACTGG
CAAATATGGATTTGTGATAGCGGTAACTCAAATAGACAATATCGGAGCTGGTCTCATACA
ACATGGACAAGGGTTTGTCATGTACCCTGTTAAATACAAAGCTGTTGTGTTCAGACCATT
CAAAGGAGAAGTTTTAGATGGTATTGTCACACAAGTAAACAAGGTTGGCATGTTTGCCCA
AATAGGACCTCTCAAATGTTTTATATCCCATCATTCAATACCAGACTATATGGAGTTCTG
CCCTAATGTAAATCCTCCATGTTATAAGAGTAAACAAGAGGATAGCGTAATACAAGAAGA
GGATGTGATCCGATTAAAGATTGTTGGTACGAGAGTTGACGCGAGTGGCATTTTTGCAAT
CGGGACTTTAATTGGAGACTATTTGGGATTAGTACCACAATAACTTGAAATTTATGTAAC
ACAGTTACAGAACACGTTATGCGCAGGATTGAACTACCACACCTCAATTTTTAACGTTAG
GAATGTTCATAGTCAAGAATTAAATGAGA
(749 bp)

- SilkBase 1999-2023 -