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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp24008_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_sorting_nexin_lst-4_isoform_X1_[Papilio_xuthus]
Ontology
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006886 P intracellular protein transport
GO:0007067 P mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0019902 F phosphatase binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0043621 F protein self-association
GO:0045335 C phagocytic vesicle
GO:0051020 F GTPase binding
GO:0090386 P phagosome maturation involved in apoptotic cell clearance
GO:0090389 P phagosome-lysosome fusion involved in apoptotic cell clearance
Transcript
Level		FPKM:32.71 TPM:30.29
ORF Entry
Sequence
(Nucleotide)
TATCCCTAAACTACCTTACAAAAGTGGAATATAGTACAACGATTATTATAAATATACAAG
ACATTTCAAAAGAATTGATCCACAAATATAGTGTAAATAAAAAAATAGATAGATATAATG
ACACATGTTCAAAAAAAAACTAGACTTCATAAAATATTTACAAGTTATTTTTCGATTTGT
AAAAATAAAACTACATCAAAACAGAATAATCATAATATAGTTTACGTTCAGTCCGAAATA
TCATCACATCATAAATTCATTTATAATAATGTTCAGATTTATTTAGCTTGCGTAGTATGC
TATGTTTTATGTAGTAAATTAGAATCAAATTCCAAATTTCTAGAAATTCCAAGATACATA
TTGTGTTTTTTGGTGAAAATTGACTTCTACAAAATATTCATAATCAAATACTGAACACCC
CTAAATTTTCCAATTCAAAACTTCTTGATACAATTTATATTAGCTTCAGTATCAATTCCT
AAGTGAAATCTAATCATCATAGTATCTTAGCGTGGTTTCCAACTTATCTACTATTTTCTT
GTAAAAGTTGATTTGTTGCTTCAAGAATTTTTGCATGGTGGCTTTTATATCAACAGTCCG
TTCTGATTTGAAATGGTTGATTTCGGCAAGAAGCGCATATGATATAACATCGGTCCTTCT
CAAGACTTCATTTAATTGTGCAACCTCCATTTTGTTTTCAGCAGTCAGTCTTTCACACTC
TCTTTTCTTTTGCACTGCACCCTTATGATTGGCCAGAACATCGGGGAAACTAGCTGCAAT
TCCTTTGTATAAATGAAATTTATCACCCAGTGGCTCCCAATCATACTTCGGTTGTTCATC
ATACATCCTACCAATATCAATGTAGACACCACCTGTCATTTTAATAGCTGAAGTCAGCTT
AGATGTTGATACTATGGTACCTTCATCCAAGCTTAAGGCATTACCAAGACTATAAAATGC
TTCTCCTATTTTCTGGCAGTCACTCTTGTATGGTCCTTGGAATCGTTTTGTTTGCACAAT
GCACATGCTAGACACAGACTTGATGGCTGTGTCGACACTGTTAATGAAAGTGTGGCACTG
TTCTGTGATATGATCAACTTGTGATTGCAATAATGCTTTCTCAGGTACCACTAGTGAAAC
ACAATAATTTAGACCTAGCAAATTATCTTTTTCAGCTTGCCTTTTACCAGCTTTCCATCT
CTTTTCATCAGTACATGTTAAGAAGTGTTGCCAAACCTCACTTCTGGAGAGCACAGGGTG
CTTACACATCCAATCTACAAACTCTTGGAGCTGAACTCGCCTGCGTTCGATTAGTTGCTC
ATCATATCTTCCAGATATCTGTTTGTCAGGCAGAGGGGGGATTGGAATAAGTGTGAACTT
TTCTTGTAGTCTCTCATGGAGCCAGTCAAAGTGTTTGTATCTCCTGGACACTTGAATATT
ATTGAATGAAGGAGTCAGTTGATAGGCTATAAAACTCTTGATCCCTTTGAATTTAGATTC
CTTTTTTGGAGAGGCCACAGTCACAATATATGGCTGAGTAATTGGGGACCAAATATATCC
ATCTTCATCTTGGATAATGTAGACCTTTTCAGAGTCTGGTACTTCTACATTAAGGGTTGC
CAGCAGGTAGCTTTCTCCACTAATCTTTGAAGATGGTGCAAATTTGTTTTTTCTAACTGT
GCCCACTGATGAGCTATAATTTGAAGATGTGTCATCTATGTGTTGATTATAATCATTAAT
AGGCATACCGGGAATCACAATGGATGATTGCTGGTTGTACTGCGATGTCTTGTTCTGTTG
CTGGGCTGGTCCTATCTCTGAGTATGTATCATCTTCCCAGTCATCATCCCAGCCATCTTC
ATGCGAAACTCCTCTTTGGTAATTGTTATCTCCTGCACTGTAGTGTTGTTCGCCCCAGTC
ATCTGCTGCTTGATCATATCTAGGTGCTGGAGGAGCAGCTTTAGTTTGAATTGATTCTTC
TGGTGTCAGTTTTCTGACATATGCAGCAGGAAATAAACCAGTTTCTCCATTAGATTTTTT
TCCTTCCCACCAGCCTTCTCCGATTTCTGTGTTGAGCAGTGTGAGCACCTCTCCACAAGT
TATGGACATCTCTGTGGTGCCAGGCTCACCAGTGAAGTCATACAAAGCCTGCACTTGGGT
CGCCATTTTAAGACCCGTACTGTTTTTCAGTATAAAACGTAATTTCAAAGCGGATACCCC
GAATGTACAGTCATCTGTTTGACAGATTAACAAAACTTGTTTTCTATAGCTATTGTTCTC
TTACAACGTATAGTGTAAAATGTGTATGTTCTCG
(2314 bp)

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