SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp23955_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_RNF126-B_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000209 P protein polyubiquitination
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006513 P protein monoubiquitination
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0071629 P cytoplasm protein quality control by the ubiquitin-proteasome system
Transcript
Level		FPKM:11.32 TPM:10.48
ORF Entry
Sequence
(Nucleotide)
GAGAACCTGTTCTTCATTTCGAAAATAGGGCAAATAGTTTGGCCTTGTTCCATTTGCTAG
CCCAGTAAAATGAATAAATAAAACCAGCTATGGTGAGGGGTTACGACATGAACATAATCT
GTGGCTTAATTTAAAAAATCCATAGATTGTGAATGCTCAAAAAAATGGCGATTGTTAAAT
TTTTGTTGAAAATTTAAAGCACAATCTTTAGGAATTGAGTTTAAATAATAAGTATTTATT
GGTGCAGTTGTATTAATTAATTTAACATGGCTGACGCAATGGTAGAACGAAGACCAACAC
TACGGTTTTTCTGCCACAGGTGTGATATAGAATTTGAAGATGTTTTGCAGGATTATACAT
GCCCATATTGTGCTAGTGGTTTTATAGAGCAATTGGAGAGTGAAGCAGATGGTGATTTTG
ACGATGCAGATATGAGCAACTTGGACGATGATCGCCAGGCACCACCACCAATGCTTAACG
ATTTAGCATTCCTGATGACGGGAGGTCGGTACCGAAACACAGGTAGAAGAGATACAATCC
TCGAACAGTTACTCTGGATGATGGGAGCCGGGAGGCCGGGCACTGGTGCTACAACTGCTG
GTGCACCATTTGTACTTGTCGGAGCACCGGGAGACTATGTTTTCGGAGGAGAAGGCTTAG
ACGCAGTAGTAACACAACTTCTAGGCCAGTTGGAGAACTCAGGGCCTCCTCCTCTACCAC
GGGATCAGCTAGCCGCATTACCACAGGAGATACTCACGGAGGATCATGCTGCTAAAGGGA
CTGCTTGTTCAGTGTGCTGGGAAAATTTTGAGACAGGCGAGACAGTATCGCGGTTAGAAT
GTGAGCATCTGTTCCACTCGTCGTGTATCTCCCCGTGGCTACAGCTACACGCCACCTGTC
CCATCTGTCGGCGCTCGCTGCTCCCAGCAGACCCTCCGCCTGCGGATACTGAAGCCATCA
CCAATACCACAAGCACCACCACAGACACCACAGCCACCGCCACGACCCAGCAACCGCCGC
TACCGCCCACGCAACCGCCCACTTCTACGGCCAGTAGTACTCCGTCAATAGCTTCAATCA
ATGCTCGGTCTGGTTTCGCGGCGGCGCTGCAGCAGATGATGCAGGCGACGGGCGCGCACG
TGACGCTCTCGGGCTTCGACTCGGGCTCGTCCGGCTCCGGCTGGCCCGACACCTCGTCGT
CGTCGCTCGGCTCGGACCGGTACAACATGGACATCGACTACGACTAACTGCAGGCTCGGC
CGTGGCGTCGTTCGTGCCGCAGAAGATATGTATTGTTATGATCGAAAACGACGCGATTGT
CACGTGAACTGTCGAAGCCTATGCGGCGAACGCGATGAGACGTACTGTGCGCGAGTGTGA
GTCGGTGTGAACTAGTCGTTGTGTGCTCACGGTGACGCCGAGCTGATCTCTAGTGTTTGC
CGTAGTGGATCCTGTGAATGTTGGGAATCGTGCCTTTCATCTGTGACGTTATTGACACTA
CTATATGTGTGTGGCGTAGTGTGGGACAACGCTCGGTGTGAAAATCTCACAGTGCACATA
GCTAATGAGTTTATAACTTGTGTCGATTTGATACAGGTTTGTTGAAATCGACATTTTGAG
GTTTTCCACGTCAGTCAATTGTGATTATCGAAATTGTGTCAATAAAAATGTTATAAATAG
AATAGTTAATGAAATTGTTATACTATATTAAATGTAACTAGTTTAATGTAATGTAATAGT
TGGGGTTGAATATAACTGACGTGGACTTGTTGTGTTAAGATTGTGTGCTAAATATTTTTT
TATGACTGTGACAGATCTAAACGATCTATATTCTGTATAGTGAATTAATGTTAATGTTTT
ACTGGTGGTAGTGCGTAATGTTAGCCCGCATGGGCAGGTATTACTGTTCTGCCTAATTCT
GCTGTGAAGCAGTAATGTATACCGGTTTGAAGGTTTAAGAAAGTGTTATGCAGCACAATT
GAGAATTAGACCTCACATCTAAAGTTGGTTGGCGGCGTTTACGTTGTAATATCTTGGTTT
CTGTTAACCACTTACCATCAAAAATACCATACAAAAATTGTGAGATTTTCAAGCTGAGCT
TAAATTATTGAATTGTTTGTGATTTCGTAAACGCGCGTTTCACGTAATAAATGAAATTGT
ATGTAGAAGAGTCATGGTTCAATTGTTTTTATTTTAGTAATCTTTTTGTCATGTAAATTA
TGTAAATATGCATCGTAAGTTAGGGCCTTTAATGCTGAAGTAACATGGATTGTAAATGTA
TTAAAAAAACGATTGAAACTTTGACTCTAGTATATAATTTTTGTTTGTTTTTTGTAAAGT
ATTGTTATTATGGATTGTGTAAAATAAATATAATACATAAAATTTTAAAATATCTGAACA
TTAAGCGTTAGCTTTATGAAAATTTTAATGATTATTTTAATTTCTCTAATACATGGTTAT
GTAAATATTTTATTTTTTGAAATTCGATTTGAGGACACCATCGTAATGAAGTATTGATGC
GTACAAAAAGCAATAATCATATTTGTAATAATAAAATGAAACAAAATACAAAATTTATTA
ATTGAATTTTGCTGTTTATTATTTAATAACATATACATTAGCCGATACCTCAGCTCTGCA
GAGTAACAAGTATCTTAAACAGTTAGTTATACAGCAATTAAGATAAATATGGAATATTAT
CCATTATAAGAGAAACTAGACTTTAAAAGAAAGGTTCTACGTCGCGGC
(2748 bp)

- SilkBase 1999-2023 -