SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp23895_c1_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_isozyme_L5_isoform_X1_[Bombyx_mori]
Ontology
GO:0000502 C proteasome complex
GO:0004843 F thiol-dependent deubiquitinase
GO:0004866 F endopeptidase inhibitor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0021670 P lateral ventricle development
GO:0030901 P midbrain development
GO:0031011 C Ino80 complex
GO:0036459 F thiol-dependent deubiquitinase
GO:0044822 F RNA binding
GO:0048853 P forebrain morphogenesis
GO:0061136 P regulation of proteasomal protein catabolic process
GO:0070628 F proteasome binding
Transcript
Level		FPKM:1.72 TPM:1.60
ORF Entry
Sequence
(Nucleotide)
AGAAAATGACATTAAACTGTTATTATAATATTGAAAATGCTTAAATTTTATACATTTTTT
TATTACTAAGAATCCGTGTAATAAAACTCGCGTTGCCATCGCAACCCCACAAACATTTAG
TATCCATCACTGTAAATATATTTCTTCACTAATCATTCTATTCGCTATACTTTTATCTTC
GTATTCGATATTTGTAAATAACGAGACGCTAGAATATTCTATCAACGTGCCACATCAAAA
CGCAAATTTCATTAATTTATTATTCATTAAAACTTCGAAACATGATTGTATTTCGTTAAT
TAGGTTTACAATTTAGATTATAAGTTAAAAAATTGTATTAAGATGTAAATAATAAACTTC
ACGAGCGATATCAGCTCAAAATGAAAAGACATTTTGTATCGATTAGAAATTGGTGTGAAG
GGAATGCTACCATTTAATATGTTGTACATGACACGAGAAGGACAAACAATTCGATATAAA
TGCTAGTTTAGAGTACATATGTAGGATTATAATTTAGTGTATCTCTACTACTTCAAACAA
AGTACATTGATATTTTGTAAAACATTTACACTTTCCTACAAATATTTATTAACACAAACA
CATCATATGTTTTAAATATTTATTAAACGTATTTTTATATATATAAATATACATTTTCGT
TATTTATTTGTATTATATTTTAGATAATATAATTTGACGGTTATATTAAACAGCTTTTAT
TTATATTTTTTCAAGCACTCTCCATATTTTGCTGTTACTCGATCTTTTTTTTCATTATGT
TTCCTGATGTGTCTGTGTTCAGTAAGCTACACAAATATTGATAAGATATTAAATCTACAT
AATAAATAATTGTATTGTTTTATTTTAATGTCAATTACAAATTACAATAGTGAATTATTC
TCAAAATATTTAAATTCATTGTCACAATTATTTAAATCCTCATTAAATTTTAATATTATT
ATTTTTCAACACGATCACAAATACACAAATTTACAAATCATCAGATTTTTCGAAATCATT
ATACTCTTTCAAATCTACGTCAAGGGAATCGGTTGAGTCTTGCGGTTGGAGCATCAAATC
ATCTTGCACGCTCTCGAGTAATTGCTGCGCGCGCTCTGAAACCTCAACGTCCTGCATTTC
CACTAAGTTTTCAACTTCTGGTTGTAAGTCTGGATTTTCAGTGTACACAGATTCTAAGTC
GGGTAAAGTTAAATCTAAATCGTCAGTGAACGGAAGCACGCGTGGCGACGCTGGTCGCGA
CACGCGTCGCGGGCTCCGGGTGGGTGGTTCCACCTTCGGCCCGCGGGAATGCTCGTGTTA
TACTTTCATTTTCTTGTGACTCCGCTTGGTAGCGCGCTCCTTGGCCTTCTCCAGAAGGGG
CATCAGCTTCTTCTCCTTAGCCAGTATTTGAAGCAAATTAATGATGAACGGCAAGTAATT
GTGACGCCTGCGTACCAACTCCTGTTTGTACTTTGCCATCTTTATTTCCTCATAATCAAT
CAACATTCTCAGTCTCGCTATTTCTGTATCGAGAGCATCGGTTTCCATACCCAGCAACTG
TGTTTCATTAAGAAGTGTATCAAGCTGACGTTGATATATCATTTTACGATCTGATACGAG
GGCCATCAAGTTGAAGTGAATTTCTCCTTCGGTGTATACATTAATCCTTCTCATTATAAT
TGGACGGACAACATCGAGCCAATCTTGTTCCGGAGCAACTGCACCATGATCAATCGGACC
TTCTTGTAGCCCATCCAGTTCGTAAAGACGGCCATCAATTGGCATATATCCTATGAAATG
ATAGGCGTCTTCATCTTTGGCAGGCATTTTAGGATCTACTTCAAAGAGAGGCTGTTGAGC
CATTGAGTTGTGTGCGCTGCGTATAGTCTGTGAGTTGCTTAATGAGAGACCTCTCATGCG
TGAGTCGAATGTCATGCTGAATTCTTTCAGTTTGGTCAATTCAGGACCAAGTTCCAAATC
TGGGTGTTTGCAATTTAACAGGAGACTGATTACAGCTTGAGTTGCACAGGCATTATTGAT
AACCTGTTTGGCAAAAAATATTTTGTCTAAGCGATCATCTGATACAATAGGCCCAGCGGG
TTCTTCATAATTAACATACTTGAACAGGAAAATGAGACCATGGACTGGTCTCAAATTTTC
AAACATGCTGTCTTCAATAGTCCACAGTTCCTCAACTTGTACACCTTTGGCACCAAATTT
GTGAATTAGCTGAGTGAAAACTCCAGGATCACTCTCTAGGAGACACCAATCCCCGGCAGA
ATCCATCTTTGGAGCTTTAGCCTTAGGTGCTGCACTGACACTGTAGGGTTTTTGGAAACA
AAAGTTATCCATGATGCCGTTATTATTCGCAACAATTAAACAAGCACTATTTCCGAGCGT
CCATTACCTACGCGCGCATCGAAGATTTGGCCAGAAAATCAATACTTTTCAGACAGGCAA
CATACATGGATAAGGTGTGTATACAAACTGCACAGTCTATCATTTTCGAAAATAGATAAG
ATACAGAATTTT
(2532 bp)

- SilkBase 1999-2023 -