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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp23389_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_caudal-like_isoform_X1_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000794 C condensed nuclear chromosome
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001227 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001568 P blood vessel development
GO:0001824 P blastocyst development
GO:0001829 P trophectodermal cell differentiation
GO:0001890 P placenta development
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007389 P pattern specification process
GO:0008284 P positive regulation of cell population proliferation
GO:0008333 P endosome to lysosome transport
GO:0009887 P animal organ morphogenesis
GO:0009948 P anterior/posterior axis specification
GO:0009952 P anterior/posterior pattern specification
GO:0014807 P regulation of somitogenesis
GO:0017053 C transcription repressor complex
GO:0030154 P cell differentiation
GO:0035019 P somatic stem cell population maintenance
GO:0043234 C protein-containing complex
GO:0043565 F sequence-specific DNA binding
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0045597 P positive regulation of cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0060575 P intestinal epithelial cell differentiation
GO:0060711 P labyrinthine layer development
Transcript
Level		FPKM:11.29 TPM:10.46
ORF Entry
Sequence
(Nucleotide)
CGATAACTACGTCGTCCGTAGCGTGTCTCGTGATCGGAGCGGTGGTGTTGTTTGTGACAG
CGAGTGTGTGTGCAATGCTCGGACGGTGATCGAAGCATGGTGAATTACGTCAATCCGCTC
GCCATGTACCAAGGCAAGGGCGGGCAATACGGCGGTGGCTGGTACGGCTGGCAGCATCAG
AACTTGGAAGAGCAACAGTGGTGCGCATGGAACGGCGCACCGGCTACGGGGGAATGGACT
CCGGATCCGCATCATTTTCCGAAAAGGGAACCAGGAGAACGAGAGATAGCCGATATGCCG
TCGCCGGCCAGGGGGGATTTGGCGAGTCCAGGAGAAGGTTCTCCAGGCTCAGGATCTCGG
CCTTCACAACCACCGGGTCCGCCGCGGTCGCCATACGAGTGGATGAAAAAACCAAACTAT
CAGACCCAACCAAATCCAGGTAAAACGCGCACTAAAGACAAATACCGCGTGGTGTACAGT
GATCATCAGCGGCTGGAGCTCGAGAAGGAATTTCACTACAGTCGTTACATCACTATTCGC
CGTAAAGCAGAATTAGCCGTCAGCCTTGGTCTCTCGGAACGACAGGTAAAAATTTGGTTT
CAAAATCGACGCGCCAAGGAAAGGAAGCAAGTCAAAAAACGTGAAGAGGTGGTGATGAAG
GAAAAGGGTGATCACGCTTCGTTGCAGCACGCGCAACTCCACCACGCGACAATGTTACAC
CACCAGCAAATGATGAACGGTATGATGCACCACCACCATTACCATCAAGGAGTACTACAA
GGCGTGCCCGAGCCTCTAGTCACAGGGGTACCGCCGGTCCCTCTACTGTGACCACATCAA
CAGGACTATTGCGACTACAGTGCCACTTTTACACAGTGACCGCTCCAGTGATTTCATGTT
ATGACCATATTATGAACGAATACCCCGATAGGGCCATCGATAGTATGTGTGACATGATTT
AATTAAATGTGTGATTTCGTGCAATCTCGTGAAACACGTTCCGATTTGGCATCATTATAA
TATTTGATACATTCAATACTCTTAGTATAGGCGCTACTTCGGTAGTTACCTTGCTGTAAG
CGGGACACTTGTTTAAGTTATAGCGTTTAGGTTTTTTCTTTGATGAGAAACAATACATGA
AAGTACATGAATAATTTCTACAAACTACGATGACAATTAAAGGAAAAACATTAGCGCAAT
AACTGTTACGTCCGTCGTTAATAATGCCTTTTGTGAAGTAGCTAAAATGAAGTAGGTATA
TTCTAAGTGTTCACGCCTTATAGCATTTTAGTGTTTAGTACATTGGTTGCAAAGTACGAA
TAATTATTCCAATATGAATTTTGTCACTTGACTGTAAATATAGATAACTATATTTTTATA
TTATTATTGATAACAATTAAGTATTAATTAATAATTGTAAGTGATTGTTTCTCAATGTTA
CTAGCACATTCACGAAGTAAGTAATTGCAAAATTAGTTGTATAAAAAAATATTGGTTTCA
CGTAGTATTTTTTTATTCATAGCCTTTTTCGCCTTGCCGTATATGATAAATGTATGTATG
ATTTTTTTTGTCAAATTATCGGATCAAATAATGTTTTATTCAAATTTTCCGTACAGATGT
TGTTTCTAGAGAATCTCAACTACAAAAGCTGATTAATTCCGTTAATTTCAAATTAAAAGC
CTGTAACATTGAGAACTGCAAATGATTTTTTACGTTGAATGAGATTATTTGTAATTTAAG
ATTTCCTGTAAATAATAGCTTAATTAATAGATTAAATTATTTTACGCCGGTAATTTTTCA
CTTTTCACATTGTAACTTCGACTTTGTAAAATCATTAGTTACATAGATTGAGGAAGGTTT
GTAAAAGCATTTTAACGAAAAGAATGATAGGTTAAACTGAATTATTTGTTAAATTTAACA
ATATTTATTGATTCACAAACCGTGGAACTAGGAAATCTTGTTTATCGTTTGTTTTGTGAT
ATATTATTATGTATAAGTTAAAATAGGGGTGCTAAAAGAATTTTTTTCTTTTCTAAAACA
ATTGTGCAGAAATTCTCGAGTTTGTTGTAAAAATAGAGTTGTGTTAATTTTTAAATGAAT
TATCGTTTGTAACACACGAATTGTTAGTATTTCTTGTACGTAGCACTATCACAAAACACA
TTTGGTAAACTAAATAAAATCATGTTAATCAAAAA
(2195 bp)

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