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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp23294_c3_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_polypyrimidine_tract-binding_protein_2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0021510 P spinal cord development
GO:0021549 P cerebellum development
GO:0030426 C growth cone
GO:0033119 P negative regulation of RNA splicing
GO:0036002 F pre-mRNA binding
GO:0043025 C neuronal cell body
GO:0044822 F RNA binding
GO:2000177 P regulation of neural precursor cell proliferation
Transcript
Level		FPKM:0.68 TPM:0.63
ORF Entry
Sequence
(Nucleotide)
AACGTTAAAAAACTCGCACTAAAGCACACAGAATCATTCATATCGTATTCGCATTTCCTG
GTTCTCGAAACCGAATGTGAAAACGTGACGTGAGCGGCCACGCTTAAAAAGTGATTTAAA
ACTAGAGGCTTAGCTATAGAACTGTGATTACACTAACTAATCGTCAATAACTATTATATT
ATCGAAGCAAAGATAATATTTACCTAAATAACGAAACAAGTATGGAAGCATGAAGATGGA
CACCGATTATCCGGCAGCAGAAGACAGTTGTGTCTAATATATTTTATTTAACAATTACTT
CTACAACTAATATTGCACACACATACACATTTCTAAATATGACATTTCTGTATTTAAAAT
AATAATAATAATTAAAAAAAAATGTGTATGCGCACAAAACTACATTTATAAAGAAAACGC
TATTAAAATATAATAATAATATAGTAAATTGTGCATTTTTAATAAGAGCGAATAAAATAT
ATTTTATAAAATACAATTCAAGAGTTGTAACTGCAAATCATATTGTAAATATTGTAACCG
ATGAATATAATAACAATGTAATGTAATAATAATTAGGGAAATTTCCGTATCCTGAATTTA
AAACAACAAGCGTGGCAATGTCATACATTGCTATCAAAATACGTTCCATTTCACATAATA
TTGCCAAACGAATCTAGCGCAATCTAATTGCAAAATAAAACTGTTATTTTAATTCGTATA
AATTCAAATTATGTTGATACAATATAGAAATCAACGCACGAATTGTCTACAAGAATAAAA
ACGTACGTAAACAAATAATTAGAACGAATATCACACAAAATAGAAATCCTCTCCTGTGTA
ACAACGGTTATGGAAGTTAGATACTATTCTGATAAAACAAGCATGATTCGGCTTAATGTT
CATGTGACGATTCATCTTAGATTTAATTATATTGTAACAGTTAAATGTTATTCATATAAG
AAAATAGAATAGCACTTAATCTATAGACTGATCCGAGTAAGCGTAATACATACATATATA
AAATTTTCAGTCGAGCGAAAATTCTCGATTTTTATGAGAGGTGAGATGTAATTGACAGTC
GCATCGAATTGATATGCGTTACTGGAACACGAGTCTCCGTCGACACAATCTAAAATAATT
ATGACAAACAGTACCGTAAGAATCTTCAATTATAGTTTAGATCCAATAGAACGGACGCGA
CTGCCAAGTATTGTGTGATATTCAGTTTGATAGTCCGGTCGAATCCGTTTAGATGCTTGA
TTTGGAGAAAGACACCCTGAGGTGATTGGATTCCGAGAGCTGGTAGTTGTGCATCTTGAT
GAGCGCGGTCACTGCGTCGTCGATGGACGACAGTTGGACCAGAGCCATTTTGCGGTCCTT
CGGGAAAAATTTAAAAGCCTTAATTGTGAATCCCCGTTTGGAGAATGCATCTTTGATATC
CTCTTCAGTCACGGTGGCTGGAATGTTCGACAGATGCAGAGTGGCGCTTGGCGGGTAGAT
GTTCTGGTAATTTTTGCTACCAGGTTTCTTGAATCTGTGGAGTGGGCTCTGCGAGTAGTC
CCTGGTAAGACCAGCGTCAGGTTGTCCTTCTTTAGGGAGCTGAACAGTTTGGTGCTTACT
TAGCATAACGCGCATTGCCTTTCCGAACACGCGTAACTTGTCCATGTGGGTCAGGGCTAG
ATGGGCCTGGTGCGGTTCTGCCATCTGAATCAAAGCCGAATCCTTCTTGTTGTAAAGTAT
CTTCACCCGTTGCACGTCACCATACACGCCGAAAAGGGTAAAGAGAGCGTCAGGCGTGAC
CATCTCTTCGTTTAGGTTAGACACCAGTAGGACTGTGGCTAATGGCAAAGGTGGGGCAGC
AAGAGCTCGCAGAGCAGGCGAGGCCGGTGTGAGAGTGAGAGCTCCGAAGGCTGGAAGCCC
CACTCCACCGACACCCACACCATACGGCGAAGCCAATCCCGAACCCAAGCCCAGGAACTG
AGGCGCCAACACACCTCCGCTGGTCAACAGCTGATGAGCGTCGCCGTCTCCGGAGGGAAG
CGTCGGATTCGTGTAGTCCCGCGACTTGTCATTGTTGTATTTCACGTTCAGGCAAGTCAT
CTTCGAATAGTCGATGCGGAGTGTGCAGCACCCGTTGTAGATATTCTGCCCGTCGAGCGC
CGTTTTTGCTGTTTGCGCCGACACCGTGTCTGGATACTGAATGAGAGCTTGGAATGAATT
GTTTTTAGTGAAAGTTACAATCTTGAGCACCTTGCCGTAGCGTTGGAAGATCGAGTAGAG
GACGTCCAGAACGATGGGATATAACATATGCTCTATGATGACACGCAGTACTGTATTGGG
ACCGCCCTGTATTTCTGTACCGCCATTAGCTGGTTGCAAAGCGTTACCGCCGCCCGCAAC
AATGGCCGCACCAGCGCTATTCGATATGACTTGTGCCGCCTGTAAAGCCGCTTGCGCCGA
TGCTGAGGCATTGCTGTGCGTCTGATCAGTTTTTAGCTCCTTGTGGTTGGAGAACTGAAC
GTAAACCGCTCGGCCACGCAACTGCGCTACACATCCTCCGAAGTACGCGACCATAGCCAC
CGCAGATATCTCCTCTGCCATTTCAAGGAATGCCTGATTTTTGCCTTTGAGCACTAGAAC
GTTGGTGACTCTTCCGAAGGGCAATCCGAGTTGTATGATCTCCGCTTCCGTCGTCTCGTT
CGGTATGTTCCGTATGTGAATGACTCGAGACGGCTTACCGACATTTTGTTCCAGTTTCAC
CTTCTTGGCAGCAGAGTCCTGGTTGTTATTGTCGGCATGGTGCGGAGCGGCGGGCGCCAT
GACGGTGACGCCACTCTGCGACAGAAGCTCGTCGGAGCCTCTCTTAACCATTTCACGTAA
TGCGTCCGGTCGCCAGTCGGAGACGTCGGGCCTCAACTAAGTTCAACTTTATTTAAATTT
TACATACACTACTTGTTCTACTTAACGTTTTCTTTTACTGTCTTCAGTTGGAGTTCAGGA
TAATAGCGGGTCCTTTATTCCAATGTGGATCGGGAAGTCTGAAGCTAATGCTGGTTGCGG
ATGTAACGCCGGCAACAGCGGCAGTGGCAAGGGACAGGACATCATAGTTGCGCCAACCTT
TATAGAGAAATCAGTGCGCGCGCAGGTAAAACACAGGAATCCCACAGGTGAACGGTACCA
GCCGTTTGAAAACTTAAATTAAAAGCTCGAAAATCGGACGACTGTAACACTCGTGCACTC
CTTGTTAGCAGCGCAGCACTACACTTACAACAACACTGTCACGGTTTGTTTATCAAATTA
CGGGCTGCTTATTAATAATTTCAATGACCCCAAGTGCGCATGCCCGTCCAACACGCGCCC
ACTTTGAAAATAGGTTATGTTTAAGTTTTGAGCACTTCCACTGAAACACCGGTACACGCA
GAAGCACAAACTTCCCAGAAGAATCCAGTTGGAACAACTTGAGAAAACTTTTCAAAAGCC
CGCCTTTTCCTCAACTTTTAAACTTTGAGACAAACAGGTTCCCACGGGTCTCGTTTCCGT
TTAATCACTTAGGAAGCACAATTTGACGATCAACCGGCTCTCCTAACGTAAATGAAGGCC
GTATGCGTTTTTTAAACACTTAAAAACTCCGAAAACCGGTACGATTTGATTCCACACGTG
ACACAGTCAAAACGTAAACACAGTAACACACGAATTCACTTTGTTTCGATGAAGGATAAC
ATGTTTAAAGTGGCACGAAGTTCGAGTGACAAATTAAACGAATAGAAAAAGAAAAGAAAC
GAAGAATACTAAAGTCGGCGACTGCGAAGCCGAGCGTCCGACACTCCTGC
(3830 bp)

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