SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp16893_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_Bre1_isoform_X2_[Plutella_xylostella]
Ontology
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0010390 P histone monoubiquitination
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0033503 C HULC complex
GO:0033523 P histone H2B ubiquitination
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
Transcript
Level		FPKM:4.85 TPM:4.49
ORF Entry
Sequence
(Nucleotide)
GGTGCATCTGTAATTTGAAGTTGTTACAGCTTAACATAATAGTTTAGATACACTTGCTTT
TAGAGCCATGACAGTATTGAACCAAGTTTTATGTAAAGGATAATAATAAACATGTAAAAT
CTAAGACCAGAAAAACAATATTCAAAATTGTCATTATTGACAAGCAGGTTAAAATGTCTA
AGCGAGGTGCCGATGAAGGTGGCAACGGCAGTAGCCAGCCACCGATCAAGAAGGTTCATT
TCGAACCTCATCTTATAGGACCTGTTTCTACCTTGGAAGAAATGGACATTAAAGTTTTAC
AGTTTCAAAACAAAAAATTAGCTCAGAGAATAGAACAACGACATAGATGTGAAGCAGAGC
TCAGGGCTCGAATAGAGCAGCTTGAGAAACGTCAAACACAAGACGATGCTGTCCTCTGTG
TAGTTAACCGTTACTGGAATCTCTTGAATGAAGACATCAGAGTTTTACTGCAGCGTTTTG
ATGCAGAAACCGCTGATGAATCAGAAAACAAAAATGAGAATGAAGCCACAACATCATTTT
TAATGCAGCTGTCAACATGGGACAAGGAAGAGTTAGATGCACAATTGGCTAACAGAGTGC
AAGTTAGCAAAAGAGCCGTTGCTAAAGTATTACAAGCATTTGATCGCCTACAACAGAGAA
ATGATAAAATTTGGCGTGCAATCAAGGGTGATGGAGACGGTGGGGCAGCCCCATCGTTGG
ATGCGACAGTTCGCGCAGCCAACGAGGAAGTGACGGCCGAAAATCGACGTCTGCAGGGAC
TTTGCACCGCGCTACACGAGGCGCACCACGCCATGACGTTGCGAGTCGCCGCATTACATG
ACTCCCTTAACAGCCGGGATACTGAGAATGCTGAGCTCAAAAATCAAATTGATGACTTGC
AGTACGAATTGATGAAGGTTCGATCCCGCAACGACAAGCTCGAGAACCACTTGGCCGAGG
CGATAGAGAAGCTGAAGAGTTACCACCAGTCGGGCGTGACCACGGCGGCCAGTGCTCCCG
CGCACTCGGGCGCCGCCGCCGCCAAGCTTGAAGACGTCGCTGCCGAGCTCGAGGAGCAAC
GGGAGCTGGCCAACAATCGCCTCGCCGAACTCGACCGACTGCATCGCCAGCATCGGGACA
CGCTCAAGGAAGTCGAAAAACTTAAGATGGACATTCGACAACTGCCTGAGTCAGTTATAG
TAGAGACCACAGAGTACAAATGCCTGCAGAGTCAGTTCTCGGTCCTTTACAATGAGTCTA
TGCAGATGAAGACAGCTTTGGATGAAACACGACTCCAGTTGCAGAACGCTAAGAACTTGC
ACATGCGACAGATTGAAATGATGGAGAGTGAAGAATTATCGCGTCAAAAAGCGCTCCGAG
CAGAAATGATTCAGTTGGAGGATGTATTGGGGCAGTTGCGAAAAGAATATGAGATGCTGC
GCATAGAATTCGAGCAGAACTTAGCCGCCAACGAACAAACGGGACCCATCAACAGGGAGA
TGCGACATCTCATTACTTCCCTGCAGAATCACAACCAACAACTGAAAGGCGAGGTACATC
GTTACAAGAGGAAATATAAGGACACCAGCCAAGAACTAAATAAGGCTCGCAAAGAGGTGG
AGGAGGCGAACACTCGCGGCGGAGAGCGCGGCGACGAGAAACCCCTCACTGTCAAGAAGG
AAGAACCTGACCCCGAGGGCGATGACGTCACTTGCGGCAACAGCGCGGGCGAGACGAAGT
TGCCTCTCTCCAAAGATCACGGCCGCGCCAAGATGCAGGAGCAGGAACAGATAATCAAGG
ATCTCAAACAACAATTGAAAAAAGCAGTGAACGAGCAGAAAGAATTGAAGTTACTGTTGG
ACATGTACAAAGGAGTCAGCAAGGAGCAGCGGGACAAGGTGCAACTGATGGCGGCCGAGC
GGAAGGCTCGACAGGAACTCGAGGATCACCGGCAAAAAGCCAAGATGGCACAGGAGAGTA
AACGAGAGCGTCGCATGGCGGACGAGGATGCGCTGCGTAAGATCAAGCAGCTCGAGGAGC
AGAAGTACGAACTGCAGAAGCAGTTGTCCTGTGCGCGGCCCAACGCTGACGCCCTGCATG
GCTTCTCCAGGCCCTTCGCTGGATCACCCGAAGAAGAAGCGTTGCTGAACGAAATGGAAG
TGACGGGTCAAGCCTTTGAAGACATGCAGGAACAGAACTCGCGCCTCATCCAGCAGCTGC
GGGAGAAGGACGACGCGAATTTCAAGCTCATGTCGGAGAGGATAAAGGCGAATTCATTAC
ATAAATTGCTGAGGGAAGAGAAACAACTACTACAAGAACAGGTCATAACTCGCGACCAGC
AGATAGAGTCCATGGGCGCGGTGGCGCGGCGGCTCGAGGAAAAGGAGCGGCTGCTGCAGG
CCACGCTCTCCGCCGTCGAGAAGGAACTGTTGCTCCGGCAGCAAGCCATGGAGATGCACA
AGCGGAAGGCCATCGAGTCTGCGCAGTCTGCGGCCGACCTCAAACTACATCTCGAGAAGT
ACCACGCTCAAATGAAGGAGGCGCAGCAGGTCGTGGCCGAAAAGACGAGCGCTCTTGAAG
CCGAAGCGTACAAGACCAAAAGACTACACGAGGAACTTGCAATATTACGGCGAAAAGCGG
AGAGGATGAAGAAAATGGAACAAGCCGGCAGCAGCATGGACGAGGTCTTACTCGAGGAGA
TCCGCGAGTACAAGGAGACGCTCACCTGCCCCTCCTGCAAGGTGAAACGCAAAGACGCGG
TGCTAACGAAGTGTTTCCACGTGTTCTGCTGGGACTGCCTCCGCACTCGCTACGAGACCC
GCCAGCGCAAGTGCCCCAAGTGCAACGCGGCCTTCGGAGCCAACGACTACCATCGCCTCT
ACCTCTCCACCTAGACGGTACGCACCACACTGTTGCGTCTACTTGTACGCGGTCCCGTCT
GGACACGTGTCCTCCCCGCGGGCTCGACCAGCCGGAGGGCCTCAGCCGGCTTGGACTGCC
GGAGGAAGACTGCGAGACCAGTTGAAGCGACGAAGACTATTCGTTAAATCACACCAGAAA
CTTGATTAAAACCGTTCAATTTGTTAATTATTAAATAGTAAAAAATTTAACAACTTTCTG
AAAAGTTAAGGGCGATTTACATCGCACCAGTGATTGGCGATAGTCGATAGTGAACAATTT
CACTGGATCCTTGTGTACACGTGTCACATGAGTAAGAATTTCATTTTGAAATTAATGTAA
TAGCATAATATAAATAATAATAAAAGATCAGTGTCGCGATGCCACAAACAGTTAAAAAGG
TGTATTATGCGACGCGCAATGGACAGCGTCCGTCGGAGCCTTCGCAATGCTGTCCTCTGT
CACTGGATCGATGTAAATTTGCATTACGGACTGATGCGCTAACAGCCGCGACACGAGTGT
ACAGAGACTGGCTTATTGTTAGTGTTTAATACATAGTTTATTTGTGTAAATATGACTCCA
ATATCTTGACAGGATAAAAATCGATTCAGTACTTACTTATCTTTAATTGTATAATTTATT
TGTAAAAGCTTCGTTTTCTGTACTTTTAAGCGTGTTTGTTGAGTAAAGATCGAGCGCGTG
TGGTCGACGACCCGTTTGTCTATGTAGCAACTTTCAACTCAAACTGTACTAGAAGATCGA
TAACTGTTAACAGCTGTCGCGACACTTAATTTCTGAGAGTTTAATGTTGATTAATCGTTC
GACATCAGTACGTTTAGTGTGAGTTTTTTAACGTTCT
(3757 bp)

- SilkBase 1999-2023 -