SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp16666_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_spectrin_beta_chain_isoform_X3_[Amyelois_transitella]
Ontology
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005516 F calmodulin binding
GO:0005543 F phospholipid binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0016199 P axon midline choice point recognition
GO:0016327 C apicolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0030424 C axon
GO:0030506 F ankyrin binding
GO:0030721 P spectrosome organization
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0072499 P photoreceptor cell axon guidance
Transcript
Level		FPKM:78.69 TPM:72.86
ORF Entry
Sequence
(Nucleotide)
ATGATACGGCGAGCTGGCCGAGCTGGCGCGCCTCCGCAAGCAGCGCCTGCTGGACGCGCT
GTCGCTGTTCAAGCTGCTCGCCGAGGCCGACGCCGCCGACCAGTGGATCGCGGAGAAGCA
CCGCATGCTCGACACCATGCTGCCGCCCAGCGACATCGACGACGTCGAGATCATGAAGCA
CAGATACGACGGCTTCGACAAGGAGATGAACGCGAACGCGTCCCGCGTGGCCGTCGTGAA
CCAGCTGGCGCGGCAGCTCGTGCACGTGGAGCACCCGCAGGCGCCGCGCATCCAGGACCG
CCAGCACCAGCTCAACCACGCCTGGAGCGCGCTCCGGGAGAAGGCTGAAGCGAAGAAGGA
TGAGCTTAAGTCTGCTCAAGGTGTGCAGACATTCCACATCGAATGTCGCGAGACCGTATC
GTGGATCGAGGATAAGAAACGCATCCTGCAGCAAACCGACGACCTCGAGATGGATCTTAA
CGGCGTGATGACTCTCCAACGTCGTTTGTCCGGAATGGAGCGCGACTTGGCCGCCATACA
GGCTCGCATCTCGTCCCTGGAGAGCGAGGCCAGCGCCATTGAGAACGAACATCCCGAGGA
GGCACAACTCATTCGGGAACGCGTCGAACAGATCACTCAGAACTGGGAGCAACTCACTCA
CATGCTGAAAGAACGCGACTCGAAATTGGAAGAGGCCGGAGACTTACATCGTTTCCTGCG
CTCCGTTGATCATTTCCAGGCGTGGCTCACAAAGACGCAGACTGATGTTGCTTCCGAAGA
TATCCCATCAAGTCTGCCTGAGGCTGAGAAACTCCTTTCTCAGCACCAAACCATCAAAGA
GGAGATTGATAATTATAAGGATGAATATGCTAAGATGATGGAATATGGAGAGAAGATTAC
TGCCGAACCGTCCACCCAAGATGATCCACAGTATATGTTCCTTCGCGAACGTTTGAAGGC
ACTGCGCGAGGGATGGGCCGAGCTGCAGCAGATGTGGGAGAACCGACAGCAGCTCCTGGC
GCAGAGCCTCGAGCTGCAGCTGTTGCAGCGCGATGCCAGACAGGCTGAAGTTTTACTCGC
ACACCAAGAACACAGGCTAGCCAAAACCGAGCCTCCGACAAACTTGGAACAGGCCGAAAA
TATTATCAAGGAACACGAGGCCTTCCTCACTACGATGGAGGCTAATGACGATAAGATCAA
TTCAGTTGTGCAGTTCGCTAATCGCCTCGTCGAGGAGAGGCACTTCGACGCGGACAAGAT
TCAGCGCAAGGCGGAGAACATCGAGGCACGCCGCAATGCCAACCGCGAAAAGGCACTTAA
CCTCATGGAGAAGCTCCAAGACCAGCTTCAGTTACACCAGTTCTTGCAGGACTGCGACGA
ACTTGGAGAATGGGTTCAGGAGAAGAACGTTACCGCACAAGACGATACCTACCGCTCCGC
CAAGACCATCCACTCTAAGTGGACCCGTCACCAGGCTTTCGAAGCTGAAATTGCGGCCAA
CAAAGAACGACTGTTCGCTGTACAGAATGCCGCTGAAGAGCTCATGAAGCAGAAACCGGA
ATTCGTTGAAGTAATTTCCCCCAAGATGCACGAACTCCAAGATCAGTTTGAAAACTTGCA
GACTACCACCAAGGAGAAGGGCGAGAGGCTCTTCGACGCCAACAGGGAAGTGCTCCTTCA
CCAAACTTGCGACGACATCGACTCATGGATGAACGAACTTGAGAAGCAAATTCAGAGCAC
CGATACCGGTAGCGATCTGGCCTCCGTCAATATTCTCATGCAGAAGCAACAGATGATCGA
GACCCAGATGGCAGTGAAGGCGAAACAAGTTACGGAACTGGAAACTCAGGCGGAATACCT
GCAGAAGACCGTGCCTGACAAGATGGAAGAGATCAAGGAGAAGAAGAAGACTGTTGAGCA
TAGATTCGAACAACTCAAGGCGCCATTACTGGAACGCCAACGTCACCTTGCCAAGAAGAA
GGAAGCCTTCCAGTTCCGTCGTGATGTCGAAGACGAGAAGCTGTGGGTCCAGGAGAAGAT
GCCCCTGGCCACAAGCACCGACTACGGTAACTCATTGTTCAACGTGCAAATGTTGCAGAA
AAAGACTCAGTCGCTGAAGACGGAGACCGACAACCACGAGCCTAGGATTCTGACGGTCAT
CTCTAACGGACAGAAGCTGATTGACGAGGGACACGAAAGTTCGCCCGAATTCAAACAGCT
TATTGACGAGCTCACTGCGAGGTGGCGAGAACTTAAGGATGCCATCGAGGAACGCAAGAA
CAATCTGTCGCAATGGGAGAAAGCACATCAGTACCTGTTCGATGCCAACGAGGCGGAAGC
CTGGATGAGCGAACAGGAACTCTACATGATGGTGGAAGATCGAGGCAAGGATGAGATCTC
CGCGCAGAACCTCATGAAGAAACACGAGATTTTGGAGCAAGCTGTCGACGATTACGCGCA
GACTATCCGTCAATTGGGAGAGACTGTCAGGCAGCTCACTGCTGAAGAACATCCACTCAG
TGAACAAATTTCCGTGAAACAATCGCAAGTAGACAAGTTGTATGCAGGACTGAAGGACTT
GGCTGGCGAGAGACGAGCCAAACTCGATGAAGCTTTAAGATTATTCCAACTATCCCGCGA
GGTCGATGACCTTGAACAATGGATCACAGAGAGGGAACTCGTCGCCAGCAGCCAGGAGCT
GGGACAAGACTACGATCATGTCACGCTGCTGTGGGAACGCTTCAAGGAGTTCGCGCGCGA
GACCCAGTCGGTGGGCTCGGAGCGAGTCGGCACGGCTGAGCGTATCGCCGACCAGATGAT
CGCCATGGGACATTCTGACAACGCCACCATCGCGCAGTGGAAGGAGGGCCTCAAGGAAAC
CTGGCAGGACCTTCTCGAGCTCATCGAGACTAGGACACAGATGTTGGCGGCGTCCCGCGA
GCTGCACAAGTACTTCCACGACTGCAAGGACACGCTGCAGCGCGTCAACGAGCGCGCGCG
CGGCGTCAGCGACGAGCTCGGCCGCGACGCCATCAGCGTGTCCGCGCTGCAGCGCAAGCA
CCACAACTTCATGCAGGACCTCACCACGCTGCAGCAGCAGGTGGAGTCCATAAAGAGCGA
GTGCTCGCGGCTGGGCGCGTCGTACGCGGGCGAGAAGGCGGCGGAGATCACGCGGCGCGA
GCGCGAGGTGGCGGACGCGTGT
(3202 bp)

- SilkBase 1999-2023 -