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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp14369_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_THO_complex_subunit_5_homolog_[Amyelois_transitella]
Ontology
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0030154 P cell differentiation
GO:0030224 P monocyte differentiation
GO:0031124 P mRNA 3'-end processing
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0046784 P viral mRNA export from host cell nucleus
GO:0051028 P mRNA transport
GO:0060215 P primitive hemopoiesis
GO:2000002 P negative regulation of DNA damage checkpoint
Transcript
Level		FPKM:4.26 TPM:3.95
ORF Entry
Sequence
(Nucleotide)
TTGATGAGTTGTAAAATTTATTCAATTCAGTGATGTACAAAGACACCAACACCTTGGTTT
ACAAATTTATATGGCTTGCTCCTGTTACGTCCTCTAACTGGATGAAGTATAACTTTGTCT
GGTGGAAATTCTGGGGAATCGCTTGTTTCCAATAAAATATCAAGACAGGCTAATAATTTT
GTTATTTGAGTAGAAAGGGTGCAGTGCTTGCGTTCCTCTAAATCTATCTCAGTATTTATG
ACTCTTTCAATATCCCGGATATCATCATTAATACCTGCGTGATGAGTACCATTCCAGTGT
AAAGTTATAGAAAATATTGGCACGCTCTTAGGATAATCGCTTCTGAGGGCAACTAAAGCC
ACCAACTTAGCTGATTGTCTGGTAATTATCGCTCTATAAAGTAAATCATTAGCAGATACT
AAACCTTCAGTTACAAGAAAAGCTGTTGATGGGGCCTGACTGTACTCAGGCCAACCAACA
GACTGCCACTGAGTCAAAGAACCTGCTAGACGCATAGAAGGAGGCAAGCTTCCTTTTGGT
GGTGAAATCTTTCCTGATTCTAGATCTTGTAGCTCATGCATAAGTTTTACTCTACATTTT
AGTCTCTTTTTCAATGTCATGATAAAATTTTCAACAGTGGCGACACTGAGATTAGGACAC
GGTTCAACAGCTCTTCTAACAGATTGCTCATTCAATTCTGAAGTCATAAAATCAATTCCA
CACATTCTTTGTGCCCAAACGTATGGGCGTCCAATTTCTGGTATGAAATGAGAAAAGCTT
TCCGATATACCTGCATTTTTTAGTAAATAAGAAGTTGCAGGGTGGGGTGAATCATCTCCC
GTATCCCCTGGGTACAGTTCATTTAAAATAGAATGTCCATTTAGAACATCAGCAGCAGAT
ACACCAGTGACAGGTTTGGGTAGCGATACAGTAAACTTCACAACTATAATTTTCAAGTTT
ATGAGGTATGATAATATGAGATTCAATGCAGTACCATCTTCTGCTTTAACTGAAACTTGT
ACATTTAAAGGATGTTTCTTGAATACTCGTTTTATTTTAGCTTCTGCTTTGTCTTCTTTA
GATACGTTTTTAGTTCTGTGATGTCGTTTCTTTTTGGTTTGTTGATCTTCATCATTATTT
TCTTGATCTGAATCTGACTCATTCGATGAAATAATATCATTTTCAACATTGTTTTGATCA
TGCCGGCGAGCTTCATCTTCATCACCGCAAACACCAACACTAATAACTTTGCTTCCTAAA
ATATCAGAATATGCGTTTGCATTTTTAAACAGTAAGAATAGTGATGCTGGAAGCAAGCTT
GCGGCCCTGGCCTCATCACGTTTTTCATCCAAGCGTAGAGCAAGACATTCTTGCAAAGGT
TTAGTGGATTTCAAGACATCTTTCAGATGTGGAGCCAATGCATCAAGCCTAGAACGTGCA
GCAGCAATGGCAGCTGCTACTCGTTCCTTGGAAGATATGAGTTCATTACAGGCTTCAGAT
AATTCACGACGTTGACGTAACTCCCACTCCAGTCGGGCTAATTGTAATTGATGTTCATCA
GCCTTTGTGACCTCTGATCTAATAATATCAGGAGGTGCATTTTTATAGAATTCTTCAAGA
GGCACAAGATCTATTTCTTCATCTTTAGATTTGAATTGTAAACATTTAGTTACTTCTTTG
TTTAAGTGATCTGCTTCGTAAAGTAAATTTTGTAACAGTAAATGTGTGGAATCAACTCTC
TGTTTCTCTTTATGGAGCGCATCACGACCAGCTCTAGTTCGTACTTTCTCCAGGCGATTT
AATTTCTTTAACGCAACCAGCAGTAATGAAGCTTCCACTCTTTTTGCATTTATCTTTTCT
TTAGCCTCCAATGTTTCTTTAGTTTTTAACTCTGCAATCTCTTTAAAAAGTTGCCTTATG
TCTTGGCATGTTTTATTGAAAAAGGCAGCATCCTTATCAGCTGGACGCAGATGAGCTTCA
GCTTCTTCAAATTCAACAACACGCTTGTATACATCAACGGGAACTGGCTTTGTTCCGTCA
TTTGATGTACTTGTATTTAATTTGCGCCGTTTCTTAACAGCCGTTACTTCTTCTTTTCCC
ATGTTTAGTTTTATTCAAGTTTATCAGATTTCATCCAAGTCTGGAACTTTAAAAAAATCA
CTAATTTAAACAG
(2173 bp)

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