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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMG_comp12013_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:16.91 TPM:15.66
ORF Entry
Sequence
(Nucleotide)
TTTTTTTTTGATATTATTATATGGTTTATTGGAATTGTTACACATTAACTTTGCACTTTT
CATTTACTCATTTATGATACTTATTGAATCAAAAACATACACCGTTTGGTAATAAATGCC
ATATAATTCAGAGGACACTCCAAGGAGGACAATATAAAGTTAGAGGCCATCAGTGACCCC
ATCAAGTGACAGTACATTTCTAACATACATTACTGAAGCTTTTACAGCTTTACCATATAT
AATTATTATTTAAATCGACTTCTTGGGAAAATTGTGAGTTACAATAGTTATTTGAAATGT
TTTCTGTAAACAGATAAAATAGCCATCTAGATATATTATATTTGCCACAGTCTACATCCA
CGCCACATCTAATCTAAAGAGCGTCACTCTGGTGTATTCAAAAAGAAATATACAAAGCTA
TCACATTAAATTAACGCAAAATATGATATAAACATATCTATGTAATCTAAAAGAATCGAA
AATATGAACAAAACTAAGAACGCCGCACTTTCAGTGTCCATCACATTATAAAATATAGGT
TCTGATTGCACATAAACATTTGTCCAGAGCTTATACACTGCTGACTATAACAAAATTACA
ATAAGATATCACTAACCGCATTCACACGTGTATACAAAGGGGGCGATATATGTAATCACA
GTAAAAGAGGAAACTTGGAGCCAATTATGAAAGGTGGAACGAATGTTGTCCCTCAGAAGC
AGCGAGCCGTAGCTTAGCGCGCATCACCTCAGCGCTACTGTAGTCTGGCAGCTTCAAGTA
GTTGACACATGTCATTACTGATGGCAAATATTCATCCGGATCCAATGAAGACTCCAGCGA
TTTACGCACCACTGTTAGCGGTGGATTCAAAGCCTTGAATCCACCAGTTGGCAGCCTTGG
ACTTCCAGTAACAAACTGTAAGAAGTGTCGTTGTTCTTCACGGTTGTACGACGCCAAAAT
ATCAATAAGCATGCGTATAGCCCGCGATTCTGCATTGTATCCATGATCCGGGCGAATACA
TTCCGCCAGCATACGTGGATCCCATCGTTGGTCGCGACCACCTGAAGGACTTCCGCAAAA
CACTTGTTCCAACTCTTCAGGATAAAATATTTTTAAGTTACTCAAAGGAAATACCGACTC
AAATCCTTCTTTGAAAGCTTCCATCTGTTTTGATACACCTTCAAAAAGTAGCCAATGAGT
TACGAGATCAATATAATTTTGCAAATTGTGCGCAGTGACGGGCATGTCCCTGCCACCCCG
ACGCAGTTCCGTGCATCCGTCTCCGGGCAAAATGAAGTCGAGCCCGAGCTCTTCAATCGG
ACATCCATCTAGCTCAAGGTTACTTATAAGTTGATTCTTCTGGTCCTGTGTATGTCGGGT
GTCGGCTGCGATGTGTTGTGCGCGATCGGCGACGCGCCGTAAACGACACAGAGAACGCCA
CAGTTCGGGCGCCACATGTCGCACGTCGCTCAAACTTAGCCAACGTTCCTCGTTCACCAC
CCATCGGTACATTGTTACCGACAGAGGAATATCCACCATTCGTGAATCCATAACCGCTTT
AGCCATGAACTTTCCAAGGAAGCGGAATTTGGCTTTGACTCGAGAGAGATGAGATGCGCG
GGCGTTGCGACCCAGCGCCTGCGGAAAGAGTCCGCACGGCCACGAAACGAAGGCAGCCGG
TTCGGGAGCATCTTTATCACGGTCCGTCGGTGAAGTGGCGCGCGTGCGTTCTTCGTCCAA
GTTCAAACCGTCGCGTACCGAAGTAGCGAGGCGGGCCGCCGCTTCGCCCGATTTCACAAT
TTCACCCCCGAAAGAGCTAGGCTTCTGTTTGAAGTTTTCGCTGCCGTGCCAAAGATCGAG
GTCCGCGCGTTGCAGTTCTTGCGAGACCAGCGCGTAGAACTCCAAGGTGGGCCCGAGACC
GGTGCCGACTTCGTTCTCGTACTGAATCTCGAGGAGCGCCTTGGTGTGCGCGAACTCGTG
CATGACGTGTTCAGCTTGGCGCAGCACGTTGTGTCGCTGCACGGTGCGCTTGCGTCGGTC
GAGGCGAGGCGCCACGCGCTCCGTCTCG
(2068 bp)

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