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Last updated: 2022/11/18
NameA_BomaMG_comp11237_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)
PREDICTED:_collagen_alpha-1(IV)_chain_[Papilio_xuthus]
Ontology
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005587 C collagen type IV trimer
GO:0005604 C basement membrane
GO:0007391 P dorsal closure
GO:0035848 P oviduct morphogenesis
GO:0055013 P cardiac muscle cell development
Transcript
Level
FPKM:2.38 TPM:2.20
ORF Entry
Sequence
(Nucleotide)
CGGCGCGCGCGCACGGGACTCAGGCGCAGCGCGCTTAGTGCCATGGTGGTCTACGTACTG
TGGTTAGTAGCTGCTCTGGCACCTAAAATAATCGGAGTAAGCTCGCAAGATGATAGATAT
GCGGATTGGAATAACATATATTCCAGGGATTTGCCGCCGACTAACTGGCCTCGTGAAGTG
GCGCCAGATACGGAGCGACCATACGCTGTAAATCAATATGGGTTGTATAATAGAAACGAT
ATACCACCCCAATCAAGACCGGAACCAGAATTAGGGCAAAACTTCGCTGTGTATGATCCG
GACACACGTCAAAGGACATCCACAGCTATTAATCGTAATTGTACAGCTCCAGGATGCTGT
GTTCCTAAATGTTTCGCTGAGAAGGGTAACAGAGGATTTCCCGGCTCACCTGGACCACAA
GGCCCACGTGGTCTTCCTGGCCATGAAGGTGCTGAAGGTGCGCAAGGACCTAAGGGGCAA
AAAGGTCAAATAGGTCCACAGGGTCCACGTGGTCCTAAAGGTGACAAAGGCAAAACTGGA
GCAAAAGGATTTGCTGGTAGAATGGGTATTCAAGGATCCCCTGGTGACCAAGGTAGACCG
GGTATACCAGGAAGAGATGGTTGTAATGGAACTGATGGTGAACCTGGAATAGCTGGACCA
AAAGGTTCTCAAGGACCGCGTGGTTACGCTGGATCCAAAGGAGATAAGGGAGATAAAGGT
GAACCAGCTCACATTGGACGATATCCGAAAGGACAAAAAGGAGAACCTGGTGCAGATGGC
ATGCAAGGACAACCAGGTCTGGTTGGACCTCAAGGACCAGTTGGTTTGAAAGGACCAAAA
GGCAGAGTTGGTCCTGCTGGCTTAACAGGACCTAAAGGAGATAAAGGTGCTAGAGGTGCA
AAGGGCCACTCGATTCAAGGTGACAAAGGAGACAGAGGCGACAAAGGTGACCGAGGTCAA
AGTTGTTCGCCAACTTCTTCCGTTGATTTCAATAATAAGGGAATTCACAAAAATATACAA
GGAGATATGGGTGAAAAGGGTGACAAAGGAGAACCAGGTCGTATGGGACAAAAGGGTGAT
ATTGGACCAATGGGGGAGCCTGGACTGTCAGGCCAGATGGGGATCAAAGGAGAAAAAGGC
TTACGAGGAAATCCGGGTGAAAGGGGACGTGAAGGAATGTATGGCGCACCGGGGCCAATG
GGTAATAAAGGAGAAAGAGGAAACGATGGATTATCTGGTTTAGCAGGAATACCTGGCAGA
AAGGGTGAACCAGGTAGAGATGGAATTCCTGGACCTAGAGGCTTAAAAGGTGTTCCTGGT
CCACCAGGGGGTCTTTCAGGTTCTCGGGGACCTCCTGGTCCCCCTGGTCCCAGAGGTTAT
GAGGGCCCACAAGGACCTAAAGGCACTGATGGAAGGCCGGGAGACAGAGGTCAAACAGGA
CCAATGGGCTCCCCAGGAAGTCAAGGTGAACCCGGAACACCAGGAATTGAGGGTCCTGCG
GGACATAAAGGTGAAAAGGGAGAAGCTGGTTTTGATGGTCAAAAAGGAGAGTCTGGGCCT
CGTGGATACGATGGAAATGTCGGACCCGTAGGACCTAGAGGAGAAAAAGGAGAAGATGGT
CTATCCATAATTGGTCCAAAAGGAAATAGTGGCTTACCTGGTTTTTCCGGAGATAAGGGT
CAAAAAGGAGAAAGAGGTTATACCGGTCTTAGAGGCGTACCAGGAAATTCCACCTTTGGT
ACACCTGGTATTCCAGGAGAAATAGGTCTTCCCGGAGAAAAGGGAGATAAAGGAATGCCT
GGTTACGACGGTTTGCCTGGAAATACTGGACCCAAGGGTAACATAGGAGGTCGCTGCAAT
GAGTGCTCCCCCGGATCTTCCGGTCCAAAGGGAGACCGTGGCAACGATGGAGCAGTTGGT
CCACGAGGCGAGAGGGGGCCAATAGGTCCAATTGGTTTTACTGGCGAACGAGGTGCTGAT
GGCATGCATGGCTTGCCTGGTGCACCTGGAGCACCTGGCGAACGGGGAGAAGATGGACCA
ACTGGTCCACCTGGAGATAGAGGAGCTGATGCCAACGTTCCGGTAAATTTAATGAAAGGT
CCTCAGGGTGATAAAGGAAGTACAGGGCCCCGAGGTCCTCAGGGTCCTAAGGGTGAAATT
GGTAGTGATGGTCCTAAAGGAGACCGAGGACAAGTTGGTATGCCAGGCCCAAAAGGAGAC
CGAGGCTATGAAGGACAGCCTGGTTTTGATGGTATACCTGGTGCAGATGGAATTCCTGGT
ATACCTGGAATAAAAGGAATATCTATAAAAGGAGACAAGGGCTTACCAGGTGATAGAGGG
TTCAAAGGTGACAAAGGTAGTCCGGGTGATAGAGGTATAAAAGGCCAAGCAGGCCAATGT
CCTGCTGATGTAAAAGAACTTACAAGAGGCGACAGAGGCGACAGAGGTGATACTGGCCCT
CCAGGGCCTGCAGGTGAACCAGGAGAAAAGGGAGATAAAGGTTACATTGGATTGCAAGGT
CAAAAAGGGGATATTGGTCCACCTGGTAAGCAGGGTCCTGTGGGAGCACGTGGGTTCCCA
GGAATTCGAGGTGAAAAAGGAGAACTCGGTTCAAAAGGTTTTCCAGGAACTCCTGGTGAG
AATGGGCCGCGAGGCTACCCCGGAAAACCAGGTTTTAAAGGAGATAAAGGAGAAGTCGGA
CCTTCCATCGTTGGTCCACCAGGCTTACCTGGTTTACCAGGTCAAAAAGGTGACTCTGGT
CTTCGAGGATTACCAGGTATACCCGGTGATGATGGTCCGCCAGGTCCTCAAGGCTTACAT
GGAGAAAAGGGAGATCAAGGATTGGTGGGTAGACCTGGATTACCTGGTCAACCAGGTCAA
AAAGGTGATGCAGGACCCGTGGGGCCCGCTGGAGTCCCAGGTATTCCTGGATTACCCGGT
AAGGTTGGAGCAAAAGGACAACAAGGTTTCCCTGGAGAACCTGGTAGGCCAGGTGTTATT
GGTTTGCCTGGTCAGAAAGGTGATATGGGAATCCAAGGGCCAGATGGCCAAAAAGGTTTT
CCGGGTTCTCGAGGACGTCCTGGACCTCCAGGTCATCCGGGCGCACTAGGCTCACAGGGA
GAAAAGGGTGATAAAGGAGAATTAGGGTATCCAGGTTTACCCGGTTCTCCAGGCCAGTCT
GGACGTCCAGGTCCTTTCGGTCCTCAAGGACCTAAAGGAGATCAAGGATTTGAAGGCCCT
CCAGGACTACCGGGATTACCTGGTCTATTGGGTCAAACTGGTGACAGAGGTTATACGGGC
CCAAAAGGTGACAAAGGGGATGCTGGCTTAGCAGCTGAAAAGGGATCAAAAGGAGAACCT
GGTCCACCTGGTCTACTTGGTATAGATGGTCTACCTGGTAGAGATGGAGAGAAAGGCGAC
ACTGGTGAACCAGGAATACCTGGTCAAGGAATACCTGGGTATCCTGGCCAAAAAGGAGAA
ATGGGGATGCGTGGGTTTGATGGACTCTCGGGACCCATTGGAGAAAAAGGAAATCGTGGT
CCTCAAGGAGTACCTGGTCTAAAGGGTAACTTGGGCATCCCAGGCGAGCCAGGTCGACCT
GGAGTACCTGGTATCGATGGAGCACCTGGCCAGCCTGGTGATGTAGGCTTACCTGGTATT
ACTGGAGAAAAAGGAGATAAAGGTGAATTAGGTTTCCCTGGACGAGATGGATTAGGCGGG
TTGAAAGGCGATCGTGGTCAACCTGGGGCAGAAGGTCCAATAGGACCAATAGGGTATCGA
GGTCCTAAAGGAGACACGGGACTGCCAGGCGTATCCATAGATATTAAAGGTGACAAAGGA
GAAGTGGGTCCAAGCGGTATTCCTGGTGAACCAGGTCAAAAGGGAGATCGAGGTCTCCCA
GGATTACAAGGATTACAAGGTGAAAAAGGTGATCGTGGCTCACTAGGAGAAAAAGGAGAC
CAAGGTTTTACTGGGCGAATGGGAGAAAAAGGTGACACTGGTCCTATCGGTCCTACCGGC
CTACCAGGCTTAACTATAAAAGGAGAAAAAGGCTTACCAGGAACTCATGGAAAACATGGG
AGGCCAGGATTACCTGGTGCTCCAGGACAAAAAGGCGATCAAGGTCTACCAGGACTTCCG
GGACAATTGGGTCGGCCTGGTATACCTGGGCTCCCAGGTGAAAAAGGACAAAAGGGTGAT
CAGGGTAATGAAGGTTTGGCAGGGCCACCAGGTCTTGTAGGTCCAACTGGACTACCTGGA
ACTCCTGGTATTACTGGGGAAAAAGGAGATCGAGGAGAGAAGGGGGCCACTGGGTTTGGT
GCACCAGGGCAAAAAGGTGATCAAGGTCCCTCAGGTATACCAGGATTACCTGGTGAGAAA
GGTGATAAAGGAGATCGTGGATTAGATGGATTACCTGGTCGAACCGGACCGATTGGTCCG
CCAGGTCAGAAAGGTGATCGTGGCTATCCAGGAAGACCAGGCTTACAAGGTGAACAAGGG
ATGAAAGGTAATAAAGGCCAAGCGGCAGAACTCGTGTACGGCGCAAAAGGAGAACCAGGA
CCGCGTGGTTTGCCAGGAAATGATGGTCTACCAGGCGTAAACGGCGTTCCTGGTCGTCCA
GGTAATAATGGACCCCCTGGTGAAAAGGGGGATAGAGGTTTTACTGGTGCTAGAGGTTTC
CCGGGACCAAGAGGTCTCCCAGGTATACAGGGAATGGAAGGTGAAAGAGGAGAAATTGGT
ATGACAGGTCAAAGTGGACTTCCAGGAGCGCCTGGAGCACCATGCGTTAGTCAAGACTTC
TTAACCGGAATTTTATTGGTACGACACAGTCAAAGAGAAGTCGTCCCACAATGTGAACCC
AGTCACGTCAAATTATGGGATGGATATTCTTTATTGTACATAGATGGCAACGAAAAAGCC
CATAATCAAGATTTAGGATATGCTGGTTCTTGTGTGAGAAAGTTCAGTACAATGCCATTC
CTATTTTGTGACTTAAATGATGTCTGTAATTACGCAAGTCGTAACGACCGTAGTTATTGG
TTATCCACTGGTCAACCAATACCAATGATGCCTGTTGAGGGACAAAATATTGCCAAATAT
ATTTCAAGATGTGTGGTCTGTGAAGTACCGGCTAATGTGATTGCAGTACACAGTCAAACA
TTAGATATTCCGAGTTGCCCAGTTGGTTGGAATGAATTATGGATTGGTTACAGTTTTGTT
ATGCACACTGGTGCAGGAGGTCAAGGTGGAGGACAGGCTTTAGCAAGTCCTGGATCGTGC
TTAGAAGATTTCCGTTCGATTCCATTTATAGAGTGTAATGGAGAAGGTGGAACTTGTCAT
CATTTTGCAAATAAACTTAGTTTCTGGCTAACTACTGTCGAAGATAGTCAACAGTTTAAT
GTACCGGAGCGCCAAACTCTAAAATCTGGTCAACTTCTTGAACGAGTCTCTCGATGTGCG
GTTTGCATTAAGAATACGACATAGTCTCATAAATTTTTATAATTTGCGGCTACTGTATTT
TTCTGTATAGGATATTGCTGTTTCTTCCTGATAAGAGAAAAAATACCATCCTTATTCAAA
TATTGTTATGGGAAACAATTAAAATACGG
(5609 bp)

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