SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaASG_c29921_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
Ontology
GO:0003674 F molecular_function
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
Transcript
Level		FPKM:0.74 TPM:0.58
ORF EntryO_BomaASG12780_3prime_partial:A_BomaASG_c29921_g1_i4
Sequence
(Nucleotide)
GTTCAGAAAGATGTCTGACGTTCGTGGTTTACTCTTCTCGCAATTTCAGAATTAATTAAT
CATAGTAGTGTCATTAAAACCATTTTATTGTAATATTTATTATTATTTCAACATATGTAA
ACGCGATTACGTACACAAGACACAATGGTTAAAAAAAAGAGACAGAGCGACCCTGGAGAA
AATGGAGACGAATCAACAGAATCTTGCGAAGAGAACGTAAAATCCGCATGTCCTCACGTC
GCGAAAGCAGTAGATCTGACTCGGCTAAAGAAAGTTATTAAAATCGGAGGATTTGAAAAA
GAATGTTCAGAGTGCAAAAAAGTTGCAAAAACTGAGGTACTTGATCCAGATTTTGAAGAA
GATTTGTCCTTGTGGATGTGTTTACGCTGTGGCACGCAACTCTGTGGCCGAACACGCAAT
AAACATGCTCTAAATCACTTCAACACGCCTCATTCTGACTGCCATGCTCTCGCTGCTAAT
TCCACCACCTGGGAAATCTACTGTTACAACTGTAATAATGAAGTTACTGCATCAACAGCC
AAAAAACTCCATGAGTGCATAGAGTACCTCAAGAAGCAGTTCCTGGCCAGTAGCACTGTT
AAATCATTGCCCCCTATTGAGTTACCATTTGAAACTAAAGACTTATCTATTATAGAAACT
ATATCAAAGGATCCCCTATCAAAAGGAAAAGATAAGGCAATGGTTAATTTAGGCCGTGTT
AGAGGTCTAAGTAATTTAGGAAATACATGTTTTTTTAATTCTGTTATGCAATGCTTAGTT
CAAACCCCATATCTATTAAAAGTATTGCAAGAGATGTCTGTGCCAGGAGAAAAGTTCAAG
TTACCAGGAGGAAAACTCAAGCTGAGAGGAGATGCAGGTGAATTAAAAGAAGTTGATCTA
CCCCCTATAGCTGGCCAGTTGGGAGAGTGGGGAACATTAACAAGGACTTTAGCAGAAACA
TTAGAGGAATTACAGGGAGGTGAGGGTGGGGTTTACACTCCAAGGAAGTTATTATCGGCA
CTGGTTAATAAACTCCCTCAATTTGGAGGAGGAGACCAACATGATGCACATGAACTACTA
AGGCATTTGCTAGAAGCTGTCAGATCAGAGGATCTACGCCGCTACCAATCGGTGATTCTG
AGCAGTTTGGGAATGAATTCAAAGGTGGACCCTGCAAAAGTGGATGGAGAAGTCAAACAA
AAGGTCAAGTTTTATGGTCAACAGGCTTCTGACACAATGCTCAGGCCCGAACAGGTATTC
CGTGGCTTTCTAGTTTCGACCTTGGAATGTCAAGATTGCCTCCATCAATCAGACAGAGCT
GAATATTTTTTGGATTTGTCTCTCCCAGTCGCGGCATGTCGTCCTCAACCTCCGGCCGTA
GCCAGGAGAAAAACTCCTAATGAAGAAAATGCGTACAATACTCAAGAAGAGAATAAGCCT
TCGAAGCATCAGCTCAAGAAAGAACGGATCGCCGCTCGGAAAGCAGCCCGGAAGAACAAA
GGTACCCACCCCGCGCCGGGACCCGCCGCGCTCTCCTGTACATGTGTACTACATCCCTTC
CTCTCCCGCAGGAGCCGCGGGCGAGGGCGGCGCCGACACCAGCGGGCCCGCCAAGGAGGA
CGGCAACTCCTCCTCCGAGCAGTCCGACGCCGACGTGGAGGACAACCTGGAGGAGCAGCC
GCGGCCCGGCCCCGCGCTCGCGCACACCGCCGCCAACTTCGCCGTCTACCACATGGAGTC
CGGCTACAACTCGGAGAAGGTCATCAGCGCAGACTCCATCCGCACCAGCCCCGTCCATCT
CGACAAGGAGAAGGCCGACAACTCTCCGGAACGCACCGACAAGGACGGGCCCCCCGTCGC
CATCCCGCTCCAGTACGAGCCGCTCGAGAACCTGTCCAACCCTGACTCCGGAGTCGCCAG
CCCCGAGGCCACCAAGCACAACTCCACCGAGACCGTCCACGACGAGCCCTCGCCCGTCAA
GCCGGAGTACGAGAGGCCCGCCTCCAGAATATCCTTCGCACCGGAGTACACCAACGAACT
CGTTTCCAGGGGGATCAGCGTCCAGGGGTGCCGCAACCTGCTGGAGAACAGCGTCGACAA
CAGCTACGACTCTCTCCTCGAAACCAAGACGCTCAACGAACTCAACGAGCAGCTCGACAA
CCTGTACCTCGAGGAGCCTCCCCCTCCCGCGCCGCAGCCCCGGCCCGCGCAGATCG
(2216 bp)

- SilkBase 1999-2023 -