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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaASG_c29181_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		DNA_repair_protein_RAD50_[Bombyx_mori]
Ontology
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000723 P telomere maintenance
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0002168 P instar larval development
GO:0003690 F double-stranded DNA binding
GO:0003691 F double-stranded telomeric DNA binding
GO:0004003 F DNA helicase activity
GO:0004017 F adenylate kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007004 P telomere maintenance via telomerase
GO:0007049 P cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008104 P protein localization
GO:0008408 F 3'-5' exonuclease activity
GO:0016233 P telomere capping
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030870 C Mre11 complex
GO:0032508 P DNA duplex unwinding
GO:0035861 C site of double-strand break
GO:0043047 F single-stranded telomeric DNA binding
GO:0046872 F metal ion binding
GO:0046939 P nucleotide phosphorylation
GO:0051276 P chromosome organization
GO:0051321 P meiotic cell cycle
GO:0051880 F G-quadruplex DNA binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:38.35 TPM:30.01
ORF EntryO_BomaASG11721_complete:A_BomaASG_c29181_g1_i1
Sequence
(Nucleotide)
TTCGGATTTCGGCCGCCTTTTTACTAAAACAGAAGTGAATGGCGCGCGTCCCGGCTTTCT
GATTAAGTTTGGCATGGGACTTTATTTGGTATTTTGAGTATAATTAAACTGTTTGTTAAG
GTTAGACCGTAAGAAAACCTAACGTACAATATGGCGGGAGTGAAATCGCTAGCAATTAGA
GGAATAAGAAGTTTTGGACCTGAAGATACCGACGAACAACGCATACTATTTGATTCTCCA
TTAACGCTGATATTAGGGCAAAATGGATGTGGTAAAACAACAATAATTGAGTGCTTAAGA
TATGCAATCACTGGTCAAATGCCGCCTGGTAGCAGGAACGAATGCTTTGTTCATGATGCA
AAAGTGAATAGATCAACAGAAGTACTCGGTCAAGTGAAATTAAAGATTGTCAATGCAAAA
GACAAACAGTTGGAGGTGACAAGGTCCATGAAGGTGACTGCCTTAGCCAAGAAAAAGACC
AAATTTCAAACACTGGATTCCTTTCTTTCTACTGTTGATGAAAGTGGCAAAACAAAAGAT
GTATCTTCAAGATGTGCCGATTTGGACATCCTTATGCATGAGGAACTTGGGGTTTCAAAA
GCCATACTAAATTCTGTCGTATTTTGCCACCAAGAAGATTCAAGCTGGCCACTCGATGAA
GGAAAAAAGGTTAAGGAAAGATTTGATGAAATTTTTGATGCTGATAAATACAGTGATTGC
TTAGATCGTTTAAAAAAAATAAGAAAGGATTATGCACAGAACTTAAAGTTGCTTGAACAA
GAAGTGGCTCATTTAACAGAGAAGAAACAAGATTTAGACAAGAAAAAACTTAATGTAGTT
AATACAGAGACAAATATCTCCCAAACTGAAATAAAAGTAACAGAACTAACACAAGAATTA
AAACCAGTTAATGAAAAATTAAGTGCTATCAAAACACTCGAGAACAACTTACTGAGTTAT
GAAACCAAACGAGAAAAAATTAAGATGAGACTAGAGCAAGCTCGAATAGAAGAGGAGAAA
CTAAAAAACAACATCAAGACTTTGTTTGAAGGAGCACTTGATGAATTGGAACAAAATATA
AAAAACTACGCAACTACAGTTAAAGCTAAACAAAAAGAGCTTGAAGATTCATACAAAAAG
AACACATCATTCAACAAGGAAGAAGAAAAAATTGCCAATGAGAAGTCTTCAAATGAGATA
GAGTACAACAAATTTATATTATTGGAAAGTCAAAATCAAGAGAAGATTGATAAGAGAAAT
GAACAGATTGTGGAAACTGCAAAAATTGCTGAAATTGAAAACATCACTGAAGTTCAAACA
AACGAGGAAGCAGAGAAAGCCACAAAAACTATTTTGGAAAAAGTAGAAAGTCTAAAAAGT
GACCATAAAGTGCAAAAATCACAAGCTGATGAAGAAGAAAAGAAAGCGCAGGGATTCGTT
GATGAATGTCGTGTAGCCTTGTCTGGTCATACACAAAAAATCAGTAGCAAAGAAGGAGAG
ATAAATAAGAAGAAAAAAGAGATTACTAAAATAGAAAAAGATATAACATCAGCAAATCAA
TCAAAAGATAAACTAGAATTGATTGAAAAGAAGTTGCTTGCAGTTGAAGAAGAACACAAA
CAAGCTGAAAACGAATTAAACATTGAAGAATGTCAGCAAGAAATCAACGAAGATGAGAAA
GCTGTGGAACAATATGAACAAGAAATGGATGAGCTTAGTCAAAAGATAACCAAACTTCAA
AAGCAAACTGCTAAATTGAAAGAAAAAGAAATGATCGAAGAGAATCTCAAAACTAAAGAA
AAACAGTTAATTGTTCTTAAAAACAAACACAAGACGGCCCTGATGGAACTGCTTGGTAAT
GTACCCGAAAAAGACTTTGCTGTGACAATCAACAAATTTGAGTGTGAAGTGCGAAATGAA
GTTGAAACCCTGAAGAAAAAATTGAAAGAAAAACAGATAGAGATAACGACTTTGGAAGCG
GAGCGAAAACATATTCGTGAATCTTTAAACGAACGACGCAGTGAACTGACTAAAGCCGAA
GACAAAATATACAAGGCATGCGGAACCCAGCCCTATGATGTTACGTTATCTAAATATACA
ACCACAGTAGAAAAACTTCAGGATGAACAAAATGTTTTACAATCTTCAATGTTCATCATA
AACAAATATAAAGGGCAACTTAAAGATAACAGTTGCTGTCCATTATGCAATCGCGGCTTT
GAAAACGAGTCTGAGGTAACCGACTTAGTAACACAACTAACAACTCAAGTTATGAATGTG
CCGGGTAAACTTGAAAAAGTTACTGAAGATCTCCAAAGAGCGTCAGCTAAAAAAGATGAA
ATACTCAGTATGAAGTCTTTAAATGAGAAAATAACCACTCTTAAAGATACGGAAATCCCC
CAGCTGGAGAAACGAATCGTTGATGTTGATACTCAAATTAAGACTCTAAATGAAACTGTG
GAAGAAATAACCATGTCTCTGATTGAACCAGAGCAAAAGATGACCACTGCTAAGCAAATA
CACGGGGATATGCCGATGCTTGACCGCTATATACAAGAAATTAAAACGGTCACCAAAAAG
TTTGAGGCAGTAAAAGAACAATGTGGCGATGTTGATTCAGAAATGACGTTGGATGTTGCG
ACTGCCAAGCAAGTGGATTTTAAGCAAAAAATTAGCACCCTAAGGAATCGCGTAAAAACC
ACACAGAAGAAACTAAATGCACACAACAAGAAACTGCAAACTTTATATGAAAAAAAAACT
AAAGCTAAGGAAGAATTGTTAAATACACAGAAAAAGGTTCAAGACATCGTAAATCTCGAG
GAATCTAAAAAGCAACTGCAATCAGATTGTGAGAGACTAGAAACCGAACTAAAAGAACTG
AAAGAAGCTATAACCCCACTGGAAGTCGCACTTAAAGAAAAAATCGATGCCAAGACCGAA
GTAGTGAAAAGGAACAGAGATTTGATCGAGGTTGGAAGTGCCTATATTGCAAAAGTCGAA
GTAGCTTTCAATAAAGTAAAGTCTCTCGATGCTGAGATCCAACAGCATAAAAAAAAGAAT
GTACCCCGTGAAATGGAGAAGATACAAGAAGCAAACGATAAATTAATGGAAAAACAAAAA
CAAATCATGACTGACAGACAAGTGCTCACAAAAAAAATTGATACTCTTAAAGATGAAATT
GCAAAGCAAGAGGTTTATAAACGTGATCTAGATGACAACTTGTGTTTGCGTAAAGCACAA
ACGGACATCACAAATTGGCAAAAACAAGATGATGAATTGAATGAAAAATTGAATGGTATT
AACAGAGAAGAATTAAATGAAAAAGAATCATTAATCATTAAGCAAACGAAGTTGTTCCAA
CAGAAGGCAGAGTGCACTGGAGCATTGAGTGAACTTAAGAAAAGTTTAAAAGGCTTCAGG
AATGAACTGGAAAAATCTTTATCGAAGGATATAGAAAAAAAATTTCGAGAAAAAATGTAT
GAACTGCATGTAACTAAAGCTATTGACAAAGATATAAGGGAATATGCTGTTGCTTTAGAT
AAATGTCTTATGGAGTTTCATAGAGAGAAAATGGAAAATATCAACATGATTATCAGGGAA
CTTTGGCGAAAGATATACAGAGGTAATGATATTGATTACATTGAAATCAAGACTGAAGGC
AACTTAACTGTAGAATCAGAACGACGCAAATATGACTACAGAGTAGTACAATCTAAAAAC
GGTGTGGAAATCGACATGCGTGGAAGATGTAGTGCTGGTCAAAAAGTACTCGCTTGCCTA
ATAATAAGGCTAGCACTTGCAGAGACATTCAGTTCCAGGTTTGGAATACTTGCTTTGGAT
GAACCAACAACAAATTTGGATCAAGAAAACATTCACAGTTTGTGTGCAGCCCTTGGTGAA
ATAGTCCAAGAGCGAATGATGCAAAAAAACTTTATGTTTATTATTATCACCCATGACAAA
GAATTTATAGAGTCACTTGGGAACATTGATAAAGTTACACACTATTATGAGGTGTCTCGA
AATGACAATGGCAAATCTAGGGTCAAGAGGATTAGATTTATGTAGGTCTATTTTTTTGTT
TGAACCATTCCTTAAATACATACAAATTTTATTTTAACAATAAGTAAAAGGCGGTGCAGA
TCGGAAGAGCG
(4151 bp)

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