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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaASG_c28754_g2_i3
Scaffold_id
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:6.15 TPM:4.82
ORF EntryO_BomaASG10922_5prime_partial:A_BomaASG_c28754_g2_i3
Sequence
(Nucleotide)
GTCGTCGTCCGAGGAGGGCGAGGTGGGCCGGCTGCAGGCGCTGCTGGAGGCGCGCGGCCT
CCCGCCGCACCTGCTCGGCGCGCTCGGGCCTCGCATGCAGCACCTCCTGCACCGGACGGT
CACCGCTAACTCGGCGGCTTCTAAAGCAGCTCAACTGCTCGCCGGCCTCCAGGCAACCGG
CGACGAAGGCCAACAGCTTCAAGCCGTCATAGAAATGTGCCAACTCCTCGTTATGGGCAA
CGAGGACACGCTCGCCGGCTTCCCGGTCCGACAAGTCGTTCCCGCTCTCGTTAACCTGCT
CGCTGCCGAACATAACTTTGATATGATGAACCACGCGTGCCGCGCGCTGACATACATGCT
GGAGGCGCTGCCCCGCAGCAGCGGCGCGGTGGCGCTGGCCGTGCCCGCCTTCCTCGACAA
GCTGCAGGCCATCACGTGCATGGACGTCGCCGAGCAGAGCCTCACCGCGCTCGACATGCT
GTCCCGCAGACACGCCAAGGCCATCCTGCAAGCGCGAGGTGTATCGGCTTGCCTGACCTA
CCTGGACTTCTTCTCCATTAATGCGCAGCGTGCCGCGCTCTCCATCACCGCTAATTGTTG
CCAAAACCTCACTGCAGATGAATTTCACCTTGTCCGAGAATCTCTACAATTGCTTGCTAA
TAGACTAACTCAACAAGACAAAAAGTCGGTGGAGTGCGTTTGTCTCGCGTTCTCGCGGCT
CGTGGACAGCTTCCAGCACGACCCGGCACGCTTGCAGGAAATCGCCACTCCGGAACTGCT
CACTAATCTACAACAACTTCTGGTGGTGCAGCCGCCACTGATATCGGGCGGGACGTTCAT
CATGGTGCTGCGGCTGCTGTGGCTCATGTGCGGCGCCTGCCCGCAGCTCGCGCTCGCGCT
GCACCAGCGGTCCATCGCCGACACGCTGCTCTGTCTGCTCACCGGCTCCACGCTACATCA
GGAGCAAGTGGAGCTGATACCGCGCCTGCCGCAAGAGCTGTATGAGATCACATGCCTCAT
CGGAGAGTTGATGCCGCGGCTACCCACCGACGGGATCTTCGCGGTGGACGCGCATCTCGA
CCGGCCCTGGTCCACCAGCACCGAGCGAACTGCGCATTGGCAGTGGCGAGACGATAGAGG
TGCGGCGGCGGGCGAGGAGGAGGTGTGCCTGAGCACGCTGGGCCGCTCCTACACGGTGGA
CCTCACCGCCATGCAGCAGCTCAACGAACACACCGGCACCGCGCGGCCCGTGCAGCGCCT
CGCCCCCCCGCACGCACCCCACGCCGCCGCCGCAGCCGCCGCGCCCGATCCACGCATTAG
CATGGTGCGGTCGAACCCGTCTCTAATCCGGGCTCTGCTGGCTGTCCTCCACGAAGTGTA
CTGGAGCTCGGCGGGACCGGCCGTGCGCTCGCAGGCCCTCAAGGCCATACTACGCTGTGT
CTATTACGCCGATGCGGCGCTACTGCGACAAGTTCTAAAGATGCAGGTGATATCGTCTCA
CATCGCCGGTATGATGGCTTCTAGCGACCTGCGCATTGTTGTGGGATCGTTGCAGCTGGC
GGAGATACTGATGCAGCGCTTACCCGAAGAGATGGGTGCTCAGTTCAGACGCGAGGGCGT
GCTGCATCAGGTCGCGCAGCTCGCCGCACCGCATTCCACCACACAGAACTTGCAAAAGTC
ACCGAACGGCCCCAATGCACGCACCAGCGGTGGGGCATCCCCTCCAACATCATCAACGGC
TTCGCTCGAGCACAACAATCTTTCCATGGCATTTTCTGCTTCAGGTTCATTTGTGGCCAC
TTCGCTACCGAGCGGTAGCGACGTGAGTGGATCGGAACCGGGTCCTGCATCTGCTTCTAC
ACATCCCCAGTTACCAACTTCAGTGCACAGGTCGGGCAGTCCCCTGCAGCTGGCTGAGAT
GTTGAAACGT
(1930 bp)

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