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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaASG_c28679_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		splicing_factor_3A_subunit_1_isoform_X1_[Bombyx_mori]
Ontology
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:19.15 TPM:14.99
ORF EntryO_BomaASG10800_complete:A_BomaASG_c28679_g1_i1
Sequence
(Nucleotide)
GTCAAATTTTGAGGTTATTTATAGCGTCATTTGGGCTGTTGTTGTAAATTGTTGTTCATA
GTGCGTAAACATCGTCTACTTTTCTGAGAGAGTAGCTGTAAACGGAAGGCACAATGCCAT
CTATAGATGTAATGCTACCACCGGGGCAGCCGTTGGAGATCCCGGAAGATCCGCCTCCAC
CACCCCCTCCAGTCATTGGCATTATTTATCCACCACCTGAAGTCAGAAATATTGTCGATA
AAACTGCCAGCTTTGTGGCTCGTAATGGTCCTGAATTTGAAGCTAGGATCAGACAGAATG
AGCTGGGCAACCCAAAGTTCAACTTCCTTAATTCAGGGGATCCCTACCATGCTTACTATC
AGCATAAAGTCAGAGAGATCAAAGAGGGAAAAGTTCCCGAACCAACTGCACCACCAACTA
TGCCATCAGGACAGCAACGAATGGGTCTCGCTCCAGCCACAGCGGCCCGCCAGCAGGAGC
TCCTTAAGGCAGCTGCTCCTGCAGAACTGCCCCCACCGCGCGACCCACCTCCAGATTTCG
AATTTATCGCTGATCCACCGTCTATATCGGCTCTGGAGCTCGACATAGTGAAATTAACCG
CGCAATTTGTCGCCAGAAACGGTCGTCAGTTTTTAACAGATTTAATGAAGAAAGAGGAGC
GTAATCATCAGTTTGATTTTCTTCGTCCCCAGCATTCACTGTTCCAATACTTCACGCGTC
TGCTTGAGCAGTACACGAAGGTGTTGCTGCCGCCAAAAGAACTAGTATCAAAGCTGAATG
CTGAGATACGCAGCGGGATATTAGAACAAGCTCGCAGTCGCGCGGCCTGGCACGCGCACC
AGGCCAAGCGTAAGGCCGCTGACGAGGCCAAAATTGAGAAAGAGAGGCTCGCGTATGCCT
CCATAGACTGGCACGATTTTGTCGTTGTTGAAACTGTAGATTACCCCGCAGGGGAACCCG
GAGACTTCCCTCCTCCGACCACTCCACTAGAAGTCGGAGCCCGCGTCCTCGCCCAAGAGA
GGGGTGAAGATATAATACGGAACCAGAATGACGACGATGATACTGAGATGCAAATTGAAT
CCGAATCGGAATCGGAGTCTGATGAGGAACTTGCGGAAATGGAGGATCGAACTCAGTCCC
ATCGGCCGGACGATAACCGCGTGCAAGACATGGAAGAGGAAAGCTCGACTTCGGAGTCCG
AGACGGAGCAGGACGCCCCGCGCGCGGACGAGGCGCCCCTGCCGCCGCGCCCCGACCGCG
TCGTCGTCAAGAAGTACAACCCCAAGGAGGCCAAGCCCCGCGCCGCCGCCGGGGACGAGT
GGCTCGTGTCGCCCATCACCGGCGAGAAGATCCCCGCCAGCAAGGTGGCCGAGCACGTGC
GCATCGGGCTGCTGGACCCGCGCTGGCTGGAGCAGCGGGACCGCGCCGCCGCCGAGCGCA
CCGACCGGGACGAGGCGCTCGCCCCCGGGGCCGCCATCGAGGCTTCGCTTAAACAGTTGG
CGGAACGTCGTACTGACATCTTCGGTGTAGGGGACGAGGAGACAACCATCGGTAAGAAGA
TCGGCGAGGAGGAGAAGAAGCGCGACGAGCGCGTGACGTGGGACGGGCACACCTCCAGCG
TGGAGGCCGCCACCCGCGCCGCCAGGGCCCACATCACGCTCGAGGACCAGATCCAGCAGA
TACACAAGGTTAAAGGTCTACTCCCCGACGAGGAGAAAGAGAAAATAGGTCCGAAGCCAG
TGACCGGGGCAGCCCAGAGCCGGGCGGGGCGTCCCCCCGCACCCCCCTCTGCCCCC
(1796 bp)

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