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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaASG_c28656_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		DNA_mismatch_repair_protein_Msh2_isoform_X3_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000403 F Y-form DNA binding
GO:0000404 F heteroduplex DNA loop binding
GO:0000406 F double-strand/single-strand DNA junction binding
GO:0000710 P meiotic mismatch repair
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006301 P postreplication repair
GO:0006302 P double-strand break repair
GO:0006311 P meiotic gene conversion
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0010165 P response to X-ray
GO:0010224 P response to UV-B
GO:0030983 F mismatched DNA binding
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0032137 F guanine/thymine mispair binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032301 C MutSalpha complex
GO:0032302 C MutSbeta complex
GO:0036297 P interstrand cross-link repair
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043570 P maintenance of DNA repeat elements
GO:0045128 P negative regulation of reciprocal meiotic recombination
Transcript
Level		FPKM:0.16 TPM:0.13
ORF EntryO_BomaASG10770_5prime_partial:A_BomaASG_c28656_g1_i2
Sequence
(Nucleotide)
CTCTTCCGATCTCGTCGCTGCTGACTATCAGATGTCCGTCTCAGAATTCACTGACGACGA
TCTGCTGACACAACTCGAAACGATAACCGTTCAAACGGCGCCTTCGGAATGTCTAATACC
GTTCTCTGATAATGATGACTACAAAGCTTTGAAGAAAGTAATGGATCGCACCAACGTGAC
CGTAACGAAACTGAAGAGAGTCGACTTCTCGACCGAAGGTCTCGTGCAGGACCTGAACAG
ATTGTTAAACTTCAAGGAAGATCAACAGCAGGACGCTAACGCCTTCCCGGAGACGAGGAA
AGACTTGGCCATGACTAGTTTAGCGGCCACGATAAAGTACAGTGCTTTACTAAACGAAAA
TTTCGTCTGTCCACAATACGAACGGACTGCTTCCTACACTTGGACGCGGCGGCGCTGACG
GCTCTCAACATACTGCCGGAGCTGGGCGACAATTCGAACTCGCCTTCTAGAAGCTTGTTC
GGTTTACTGGACAGGTGTCGCACTCAGCACGGCAAAAGATTGCTGGCTCAATGGCTGCGA
CAACCACTCCGCGACATTAACCTAATCAACGAGCGGCTAGACGT
(584 bp)

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