SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaASG_c28256_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		5'-3'_exoribonuclease_1_isoform_1,_partial_[Danaus_plexippus_plexippus]
Ontology
GO:0000723 P telomere maintenance
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004534 F 5'-3' exoribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006396 P RNA processing
GO:0007126 P meiotic cell cycle
GO:0007569 P cell aging
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:6.31 TPM:4.94
ORF EntryO_BomaASG10278_3prime_partial:A_BomaASG_c28256_g1_i1
Sequence
(Nucleotide)
TGTGACGTGTGGTGTGTGTGTGTGTACCGTACTGTGATTCTCAAAATTAAAATAAAATTT
GATCAATCAATCTATAAAATTAAACTCTCAGTTACAAAAGTTGTAACTTTAGAATATAAT
CTTGGAGTGATGCAATATCCAGTCCTGTGGGTGATGAACAGTGAATAAACTTAGTGCAAG
CGTTTATCTCTAAATAAGGTTAACTGTTCCAGTGTTAACTATTGTCAAAAATGGGTGTCC
CAAAATTTTTCCGTTATACCAGTGAAAGGTATCCTTGTCTCAATGAGCTGGTAAAACAGT
ATCAGATTCCAGATTTTGATAACATGTATTTAGACATGAATGGAATCATTCACAATTGCT
CGCATCCTGATGACTCCAACCCACATTTTCGTATCACTGAAGAGAAGATATTCACTGATG
TCTTCCATTATATTAGTATTTTATTTCAAATTGTCAAGCCAAAAAAATTATTTTTCATGG
CTATTGATGGAGTTGCACCTAGAGCGAAGATGAACCAGCAGAGAGGCAGAAGGTTCCGGT
CTGCTAGAGAGGCAGAAAATTTAGAAGCAGAGGCTAAAGCAAAAGGG
(587 bp)

- SilkBase 1999-2023 -