SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
 
NameKWMTBOMO12157
chromosome
/Scaffold_id
Bomo_Chr20 (Genome browser)
vs nrretrotransposon_protein,_putative,_Ty1-copia_subclass_[Oryza_sativa_Japonica_Group]
Ontology
GO:0015074 P DNA integration
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
Protein Structure
Expand view
Expression Level
InterproscanInterproscan result page
Sequence
(Amino Acid)
MEAYINKIKELACQLSEMESALDDEFIAVIMLSGLTEDFDPLIMAIENSNVKLTTELVSG
KLLAENQRREEKQDITALVTKKPPRCFKCKNVGHISKNCSNKGSFKESADVGGNKGKNKS
RYQTRNNPKQNIPKDKALFAALSVKISSDVWYIDSGATNHMCNDKKYMMDFRPNSVDVSI
VNGEKLRTGGIGHEAICLFFEYKNETFRYFQQFKALVEKETGKELKILRTARGGEYMGEF
QEFLKKNGIQHQKTIADSPQQNGVAERANRSVIEKAWSMLRDPRLGMKFWAEAVNTAVYL
KNRSPTKAVIGATPEEKWSNKASKRASFVRLVDNPDDPQTAAEALNGPESNSWRKAMADE
YNSFVKNKCWTLTELEPSHKPVKSKWIFKRKYGADGELLKYKARLVAKGYTQKYGIDYQE
TFSPVVRYSTIRILLALAAEHGLSIEHLDVKMVFLNDDLEETVYMEQPEFFQEKGKENMV
YRLNKAVYGLKQASKTWYDKITKILCHKLLFKQLSTEPCVYFKSENKSMMIIVLYVDDPL
FSHPPTFKENRK
(552 a.a.)
Sequence
(Nucleotide)
ATGGAAGCCTACATCAATAAAATTAAAGAGTTGGCGTGTCAACTGAGTGAAATGGAATCC
GCATTGGATGATGAGTTTATTGCCGTTATAATGCTAAGTGGGCTCACAGAAGATTTTGAC
CCCCTCATCATGGCAATTGAGAACTCAAATGTAAAACTCACCACGGAACTTGTCTCAGGA
AAACTCTTGGCAGAAAACCAGAGGCGTGAGGAGAAACAAGATATCACTGCGTTGGTAACC
AAGAAGCCACCGAGATGCTTCAAGTGCAAAAATGTGGGTCATATTTCTAAGAATTGTTCC
AACAAAGGAAGCTTCAAGGAGTCAGCGGACGTAGGAGGCAACAAAGGCAAAAATAAATCC
AGATATCAGACTAGGAACAATCCGAAGCAGAATATCCCAAAGGACAAAGCGCTCTTTGCA
GCTCTGTCTGTAAAAATAAGTAGTGATGTGTGGTACATTGACTCCGGTGCTACTAATCAT
ATGTGCAATGATAAAAAGTACATGATGGACTTCCGACCTAATAGTGTGGATGTGAGCATC
GTGAATGGTGAAAAGCTACGAACAGGTGGCATTGGACATGAAGCAATATGTTTATTTTTT
GAATACAAAAATGAAACTTTTCGGTATTTCCAACAATTCAAAGCTCTTGTTGAGAAAGAA
ACGGGAAAGGAATTAAAAATACTTAGGACTGCTAGGGGCGGTGAGTATATGGGTGAGTTT
CAGGAATTTCTCAAGAAGAATGGCATCCAACACCAGAAAACTATTGCGGATAGTCCGCAA
CAGAATGGTGTTGCTGAACGGGCCAATAGGTCCGTCATAGAGAAGGCATGGAGTATGCTG
CGGGATCCTAGGCTGGGAATGAAATTTTGGGCTGAGGCTGTGAACACTGCCGTATACCTT
AAGAACCGAAGTCCAACCAAAGCTGTGATAGGAGCTACTCCGGAGGAAAAATGGTCCAAC
AAAGCAAGCAAGAGGGCAAGCTTCGTGAGATTAGTCGACAACCCTGATGATCCCCAGACT
GCAGCCGAGGCCTTAAACGGGCCTGAATCGAACAGTTGGAGAAAGGCAATGGCAGATGAG
TATAATTCCTTTGTTAAGAACAAGTGTTGGACCCTGACTGAGCTTGAACCCAGCCACAAA
CCAGTCAAAAGTAAATGGATTTTCAAAAGAAAATATGGAGCAGATGGAGAGTTACTAAAG
TATAAAGCTCGTTTAGTGGCCAAGGGTTACACACAGAAGTACGGTATTGATTACCAAGAG
ACTTTTTCACCAGTGGTAAGGTACTCTACAATTAGGATTTTACTTGCTTTAGCAGCTGAA
CATGGCCTGTCCATTGAGCACCTGGATGTCAAAATGGTGTTCCTTAATGACGACCTCGAG
GAAACTGTATACATGGAGCAGCCAGAGTTCTTTCAAGAAAAAGGAAAAGAGAACATGGTG
TACAGGCTAAATAAAGCTGTGTACGGCTTAAAACAGGCATCCAAGACATGGTATGACAAA
ATTACAAAGATTTTGTGTCACAAACTACTATTCAAGCAATTAAGCACTGAGCCATGTGTC
TACTTTAAAAGTGAAAATAAGTCTATGATGATAATAGTTCTCTATGTCGATGACCCATTG
TTTTCACATCCCCCAACTTTCAAGGAAAACAGAAAATAA
(1659 bp)

- SilkBase 1999-2023 -