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Last updated: 2022/11/18

Silkworm GeneModel Entry

NameBGIBMGA003759-TA
JBrowseBomo_Chr4
chromosome_No.
Scaffold_id
Scaffold Length		chromo4
Bm_scaf91
1567689 bp
UniRef
UniRef50_Q9V460 (67%/813)
Cluster: Transcription elongation factor SPT5; n=5; Eumetazoa|Rep: Transcription elongation factor SPT5 - Drosophila melanogaster (Fruit fly)
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000176 C nuclear exosome (RNase complex)
GO:0003711 F transcription elongation regulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
Orthologue
Sequence
(Amino Acid)
MSDSEGSNYSGSGSEAGSAVSKQSHRSAASNRSARSRSISRSRSRSVGSDASKNRDDEAK
EASGDEEVEDEQEPEGEDLVDSEEYEEDEEEERLRKKRKKDSRYGGFIIDEAEVDDEVDE
DDEWEEGAQEMGIVGNEVDEIGPTAREIEGRRRGTNLWDSQKEEEIEEYLRNKYADESAA
LRHFGEGGEEMSDEITQQTLLPGIKDPNLWMVRCRIGEEKATVLLLMRKFIAFQFSEEPF
LIKSVVAPEGVKGYVYIEAFKQTHVKNIIDKVGTLKSGVWKQEMVPIKEMTDVLRVVKKQ
SGLKPKQWVRLKRGLYKDDIAQVDYVDLAQNQVHLKLLPRIDYTRLRGALRTVQSDSEAA
KRKKKRRPPAKPFDPEAIRAIGGEVTSDGDFLIFEGNRYSRKGFLYKNFTMSAILSEGVK
PSLTELERFEEQPEGIDIELAAPAKDDPAGLHSFSMGDNVEVCTGDLANLQARITAIDGS
MITVMPKHDGLKDPIVFHPNELRKYFKMGDHVKVVAGRYEGDTGLIVRVEPHRVVLVSDL
TMHELEVLPRDLQLCSDMATGVDSLGQFQWGDMVQLDPQTVGVIVRLEKENFHVLGMQGK
VIECKPQALQKRRENRFTVALDSEENTIQKRDIVKVIDGPHAGRDGEIKHLYRNFAFLQS
HMYLDNGGIFVCKTRHLQLAGGARGNNATAAGLTLGFMSPRIASPAHPGAGRGGSTPRGR
GGRGGGGGRGVTRDRELIGQTIKITGGPYKGNVGIVKDATGSTARVELHSSCQTISVDRG
HIAGAGAGAATGGASSYSRTPSRTPAAGAATPTYRDTGIKTPMHGAATPVYEVGSRTPHY
GSSTPAHEGSRTPAHGAWDPSGAATPARPDFDYEPDAYGAGPFTPQTPGAMYGSDHTYSP
YSPGRSEGESAEAGAWAAPELVVRLRAGAADGLAAQTAVVRATGGGSCALYLPAEERVVS
VPPDLLEPVLPQAGERVKVIAGEDRDAVGQLISIENQEGVVKFGTDDIKIMQLRHLCKMA
S
(1021 a.a.)
Sequence
(Nucleotide)
ATGTCGGATTCGGAAGGTAGTAACTATTCGGGGAGTGGGTCCGAGGCAGGCAGTGCTGTA
TCAAAACAATCACATCGCAGCGCTGCATCGAATCGGTCGGCAAGATCGCGTTCTATCTCT
CGATCAAGAAGTCGTTCAGTAGGTTCAGATGCAAGTAAAAATAGAGATGATGAAGCCAAA
GAAGCATCTGGCGATGAAGAAGTGGAGGATGAACAAGAGCCCGAAGGTGAGGATTTGGTT
GATTCTGAGGAGTATGAAGAAGACGAAGAAGAGGAGAGGCTGAGGAAGAAAAGAAAAAAG
GACAGTCGTTATGGTGGATTCATTATTGACGAAGCTGAGGTGGATGATGAAGTTGATGAA
GATGACGAATGGGAAGAGGGAGCCCAAGAAATGGGTATTGTAGGAAATGAAGTAGATGAA
ATTGGGCCAACAGCTAGAGAAATTGAAGGTCGAAGAAGAGGCACTAACCTTTGGGATTCA
CAGAAAGAGGAGGAGATTGAAGAATATCTTCGAAATAAGTATGCAGATGAATCAGCAGCC
CTCAGACACTTTGGTGAAGGTGGAGAAGAGATGTCTGATGAAATAACTCAGCAAACTCTA
CTACCCGGTATCAAGGATCCAAATTTGTGGATGGTCAGATGTAGGATTGGAGAAGAGAAG
GCTACTGTTTTACTTTTGATGCGAAAATTTATTGCTTTCCAATTCTCGGAAGAACCTTTT
TTGATAAAGTCAGTTGTAGCACCAGAAGGAGTCAAAGGCTATGTGTACATAGAGGCTTTC
AAGCAGACACATGTTAAAAACATTATAGACAAAGTGGGAACCCTTAAGTCTGGAGTGTGG
AAACAAGAAATGGTGCCTATTAAGGAAATGACTGATGTTCTCAGAGTAGTCAAAAAGCAA
TCAGGACTTAAACCGAAACAATGGGTCAGATTAAAACGAGGTTTATACAAAGATGATATT
GCTCAAGTTGACTATGTAGACTTGGCACAGAATCAAGTGCATTTGAAACTACTTCCTAGA
ATAGATTATACAAGACTGAGAGGAGCTTTAAGAACAGTACAGAGCGATAGTGAAGCAGCA
AAGCGAAAGAAAAAGAGAAGGCCTCCTGCTAAACCCTTTGATCCAGAGGCAATCCGAGCG
ATCGGTGGAGAAGTTACTTCCGATGGTGATTTCCTCATATTTGAGGGCAATAGGTACTCT
AGGAAAGGATTTCTGTATAAAAACTTTACAATGTCGGCGATACTGTCAGAAGGTGTCAAG
CCTTCACTTACAGAGTTGGAAAGATTTGAAGAGCAACCGGAAGGTATCGATATTGAGTTG
GCTGCTCCCGCCAAGGACGACCCTGCCGGCTTGCATTCCTTCTCCATGGGTGACAATGTG
GAAGTCTGTACTGGAGATCTTGCGAACTTGCAGGCCCGCATCACTGCTATCGACGGTTCG
ATGATCACTGTCATGCCAAAACACGATGGTCTTAAGGACCCAATTGTCTTCCATCCGAAT
GAGTTGCGCAAGTACTTCAAAATGGGTGATCACGTGAAAGTGGTGGCTGGGCGTTACGAG
GGCGACACAGGCCTCATAGTGCGCGTCGAACCGCACAGGGTCGTGCTTGTTTCCGACCTC
ACCATGCACGAGCTTGAGGTGCTGCCCCGTGACCTACAGCTCTGTTCAGACATGGCGACT
GGCGTTGACTCCCTCGGACAGTTCCAGTGGGGAGACATGGTGCAACTGGATCCACAGACC
GTCGGAGTTATCGTGCGCCTCGAGAAAGAGAACTTCCACGTGCTCGGCATGCAGGGCAAG
GTCATCGAGTGCAAGCCGCAAGCGCTACAGAAACGCCGCGAGAACCGGTTTACAGTCGCG
CTCGATTCCGAGGAGAACACGATTCAGAAGCGCGACATCGTTAAAGTAATCGACGGGCCG
CATGCCGGACGCGACGGTGAAATCAAACATCTCTACCGGAACTTCGCCTTCCTCCAGTCG
CACATGTACCTCGACAACGGCGGCATCTTCGTGTGCAAGACGCGCCACCTGCAGCTGGCC
GGTGGAGCCAGGGGAAATAATGCCACCGCCGCCGGACTCACGCTCGGCTTCATGTCGCCG
CGGATAGCTTCTCCTGCACACCCAGGGGCCGGCAGGGGAGGCTCCACCCCTCGCGGTCGT
GGGGGCCGAGGCGGCGGCGGAGGTCGAGGCGTCACTCGGGATCGCGAGCTCATTGGCCAA
ACCATTAAGATCACGGGGGGACCATACAAGGGAAACGTCGGGATCGTCAAAGACGCGACC
GGCAGCACCGCGCGCGTCGAGCTGCACTCCTCCTGTCAGACCATCTCCGTGGACCGCGGG
CACATCGCCGGGGCGGGGGCCGGGGCTGCGACCGGCGGGGCCTCGTCCTACTCGCGCACG
CCGTCCCGCACGCCGGCCGCCGGCGCCGCCACCCCCACGTACCGCGACACGGGCATCAAG
ACGCCTATGCACGGCGCCGCTACACCCGTCTACGAGGTGGGCTCGCGCACGCCACACTAC
GGGTCGTCGACCCCGGCGCACGAGGGGTCGCGCACGCCGGCGCACGGGGCCTGGGACCCG
AGCGGTGCCGCCACCCCGGCGCGACCGGACTTCGACTACGAGCCGGACGCGTACGGCGCG
GGACCGTTCACTCCGCAGACGCCCGGCGCCATGTACGGCTCGGACCACACGTACAGCCCG
TACAGTCCGGGCCGGTCGGAGGGCGAGTCGGCGGAGGCGGGTGCGTGGGCGGCACCAGAG
CTCGTGGTGCGTCTGAGAGCGGGAGCTGCGGACGGTCTGGCCGCACAGACCGCGGTGGTC
CGTGCGACCGGCGGGGGCTCGTGCGCGTTGTACTTACCGGCGGAGGAGCGAGTGGTGTCC
GTGCCGCCGGACTTGTTAGAGCCGGTGCTGCCTCAGGCGGGAGAGCGCGTGAAGGTGATC
GCGGGAGAGGACCGGGACGCGGTCGGACAACTTATCTCCATCGAAAACCAAGAGGGAGTC
GTCAAATTCGGCACCGACGACATCAAAATCATGCAACTACGTCATCTTTGCAAGATGGCC
TCTTAA
(3066 bp)

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