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Last updated: 2022/11/18

Silkworm GeneModel Entry

NameBGIBMGA003018-TA
JBrowseBomo_Chr4
chromosome_No.
Scaffold_id
Scaffold Length		chromo4
Bm_scaf13
6731059 bp
UniRef
UniRef50_P08266 (87%/1158)
Cluster: DNA-directed RNA polymerase II subunit RPB2; n=12; Eukaryota|Rep: DNA-directed RNA polymerase II subunit RPB2 - Drosophila melanogaster (Fruit fly)
Ontology
GO:0000287 F magnesium ion binding
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
Orthologue
Sequence
(Amino Acid)
MYDTEDDQYEEEDVEITPELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED
SPPIELQAEAQHFSGEMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYS
APLYVDITKTIEKEHEDPIETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLSELNECPLDP
GGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMMA
RGGQNIKKSAIGQRIMAIVPYIKQDIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMX
XXXPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDD
RDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDFNLELAIKTKIITDGL
RYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNT
LWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA
TKIFVNGCWVGIHRDPEQLMATLRKLRRHMDIIVSEVSMIRDIRDREIRIYTDAGRICRP
LLIVNNGVLLLKKKHIDDLKEKDYNNYGWQNLVASGVVEYIDTLEEETVMIAMSLDDLNQ
VKEYAYCTTYTHCEIHPAMVLGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVR
MDTLAHVLYYPHKTLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVER
GFFRSVFYRSYKDSESKRNGEQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGD
DVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRV
RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE
CIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFL
GPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFL
RERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELM
SMNIAPRLMVVS
(1152 a.a.)
Sequence
(Nucleotide)
ATGTATGATACAGAAGATGATCAATACGAAGAGGAAGATGTGGAAATAACACCTGAGCTT
TGGCAAGAAGCTTGTTGGATTGTCATCAACGCTTATTTCGATGAAAAAGGTCTAGTGAGA
CAGCAATTAGATAGCTTCGATGAATTTATTCAAATGTCGGTACAACGTATAGTTGAAGAT
TCTCCACCCATAGAATTACAAGCAGAAGCACAACATTTCTCTGGTGAGATGGAAACACCA
CCAAAATATCGTCTTAAATTTGACCAAATTTATTTATCTAAACCTACTCATTGGGAGAAA
GATGGAGCTCCATCTCCCATGATGCCCAATGAAGCACGTCTTCGTAATTTAACATATTCG
GCACCTTTATATGTTGATATTACAAAAACAATAGAGAAAGAACATGAGGATCCTATTGAA
ACGCAACATCAGAAAACATTTATTGGCAAGATTCCTATTATGCTTAGATCTACATATTGC
TTACTAAACAGTTTGACTGACCGTGACTTGTCAGAATTGAATGAATGCCCCTTAGATCCT
GGTGGTTACTTCATTATTAATGGATCAGAAAAAGTACTAATTGCACAGGAAAAAATGGCT
ACCAATACTGTCTATGTATTCAGCATGAAGGATGGCAAATATGCTTACAAAACAGAAATA
AGATCATGTCTGGAACATAGTTCTAGACCGACATCTACATTATGGGTTAATATGATGGCT
CGAGGAGGACAAAATATAAAGAAATCTGCTATTGGTCAAAGAATTATGGCAATTGTCCCA
TATATCAAACAAGACATACCTATAATGATTGTATTCAGAGCTTTAGGTTTTGTTGCTGAT
AGAGATATATTGGAACACATTATATATGATTTTGATGATCCAGAAATGATGGAAATGCNN
NNNNNNNNCCCAGGTGTCACCAAAGAAAGACGTATTAAATATGCTAGAGAAATCTTACAA
AAGGAAATGTTGCCACATGTTGGAGTATCAGATTTTTGTGAAACAAAAAAAGCTTATTTT
CTAGGCTACATGGTACACAGATTATTATTAGCTGCTTTGGGTCGAAGAGAACTGGATGAT
AGAGATCATTATGGCAACAAAAGATTAGATTTAGCAGGACCACTTTTGGCTTTTCTATTT
AGAGGCTTATTCAAAAATTTACTAAAAGAAGTCCGAATGTATGCTCAAAAATTTATTGAT
AGAGGAAAAGATTTCAACTTGGAACTTGCTATCAAAACAAAAATCATCACTGATGGTCTT
CGTTATTCTTTGGCAACTGGTAATTGGGGTGACCAAAAGAAAGCTCATCAGGCCCGAGCT
GGAGTATCTCAAGTGTTGAACAGATTAACTTTTGCATCTACTTTATCCCATTTAAGACGT
GTCAATTCTCCAATTGGACGTGATGGTAAACTTGCTAAACCACGTCAATTGCACAATACT
TTATGGGGTATGATTTGTCCTGCTGAAACTCCAGAGGGAGCTGCTGTTGGCTTAGTGAAG
AATTTAGCATTAATGGCTTATATCTCAGTAGGAAGTCAACCTTCACCAATTTTGGAGTTC
TTGGAAGAATGGTCAATGGAAAACTTGGAAGAAATTGCACCATCAGCTATAGCTGATGCC
ACAAAGATATTTGTGAATGGTTGTTGGGTAGGAATACACAGGGACCCTGAACAGTTGATG
GCTACACTACGTAAACTAAGACGTCATATGGACATCATTGTCTCTGAAGTCAGTATGATT
AGAGATATAAGAGACAGAGAAATCAGAATCTATACAGATGCAGGTAGAATTTGTAGGCCA
CTACTTATTGTCAATAATGGTGTCTTATTGTTGAAAAAGAAGCACATAGATGATTTAAAA
GAAAAGGACTACAATAACTATGGTTGGCAAAATTTGGTGGCTAGTGGAGTAGTTGAATAT
ATTGATACTTTGGAAGAAGAAACTGTGATGATTGCCATGAGTTTAGATGACTTGAATCAA
GTTAAAGAATATGCATATTGTACTACTTATACACATTGTGAGATTCATCCTGCAATGGTA
CTGGGTGTCTGTGCGTCTATTATTCCATTCCCAGATCATAATCAAAGTCCCAGAAATACT
TATCAAAGTGCTATGGGTAAACAAGCTATGGGAGTTTATATCACAAATTTCCATGTTAGA
ATGGATACACTGGCTCATGTTTTGTATTATCCTCACAAAACCCTGGTTACGACAAGATCT
ATGGAATACTTACGATTTAGAGAATTGCCAGCAGGAATTAACTCCATTGTTGCTATTCTT
TGTTATACCGGATATAACCAAGAAGATAGTGTTATTTTGAATGCATCTGCTGTAGAGAGA
GGATTCTTTAGATCCGTATTTTACCGTTCATACAAAGATTCTGAATCTAAAAGAAATGGA
GAACAAGAAGAACAGTTTGAAAAACCAACCAGACAGACATGTCAGGGTATGAGGAATGCT
CTGTATGACAAATTAGATGATGATGGTATTATTGCTCCTGGTATTAGAGTATCAGGTGAT
GATGTTGTCATAGGAAAAACTATAACTTTGCCAGAAAATGATGATGAGTTGGAAGGTACA
ACAAAACGATTTACAAAGCGAGATGCATCCACTTTCTTACGTAATAGTGAAACTGGAATT
GTTGACCAAGTAATGTTAACATTAAATAGCGAAGGTTATAAATTTTGTAAAATTCGAGTC
AGATCTGTACGCATCCCGCAAATTGGAGATAAGTTTGCTTCACGACATGGTCAAAAAGGA
ACATGTGGAATTCAATACAGGCAAGAAGATATGCCATTTACTTGCGAAGGTATAACACCA
GATATCATTATTAATCCTCACGCTATCCCTTCACGTATGACAATTGGTCACTTGATTGAG
TGTATTCAAGGGAAAGTATCTTCTAATAAGGGAGAGATCGGTGATGCAACCCCATTCAAT
GATGCTGTAAATGTGCAAAAAATATCATCTCTGTTACAAGATTATGGTTACCATCTACGT
GGTAATGAAGTCATGTACAATGGGCATACAGGCCGTAAAATTAATGCGCAAGTTTTTTTG
GGACCAACTTACTACCAACGTTTAAAGCACATGGTCGATGATAAAATTCATTCTAGAGCT
AGAGGTCCAGTACAAATTCTAGTGAGACAGCCTATGGAAGGTAGGGCAAGAGATGGTGGA
TTACGTTTTGGTGAAATGGAACGTGATTGTCAGATTGCACACGGAGCTGCCCAATTTTTA
CGTGAACGTTTATTTGAAGTATCAGATCCTTACCGTATACACGTGTGTAATTTCTGCGGC
CTGATCGCTATAGCTAATTTGCGTAACAATACATTTGAATGCAAAGGCTGCAAAAACAAA
ACTCAAATTTCGCAAATCCGTTTACCATATGCAGCCAAGTTACTATTCCAGGAACTAATG
TCGATGAATATCGCTCCTAGACTAATGGTAGTGAGTTAA
(3459 bp)

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