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Last updated: 2022/11/18

Silkworm GeneModel Entry

NameBGIBMGA002695-TA
JBrowseBomo_Chr5
chromosome_No.
Scaffold_id
Scaffold Length		chromo5
Bm_scaf20
5834375 bp
UniRef
UniRef50_Q172A2 (56%/117)
Cluster: Staufen; n=2; Neoptera|Rep: Staufen - Aedes aegypti (Yellowfever mosquito)
Ontology
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005622 C intracellular anatomical structure
Orthologue
Sequence
(Amino Acid)
MSGHPPQHMPGHQAMPAHHQMPPHQLHRENRHVTLTRRAEGWAGMGRQWAAWAAWEYLHT
TDLHRDLRIRSDLCHIIHQANITMYHRRNCKVAAGSVSAGPVSGSAAVPEASANVGAALS
AGGADCAPAAGDGEARAPAAAANSKEKTPMCLVNELARYNKIKHQYRLTSETGPAHKKVF
TVTLRLGEAEEYTAEGSSIKRAQHAAAGAALAGTAYPPPPPRPAPPLTALHHHHRNSGTV
MPTVELNALAMKLCQPAIYTSLPAVAGCGRGARGRGYGGGVFARVLPALVYRVRVDVFVT
TCTVGEIETEGEGNGKKVSKRRAAERMLEEMRHRWPLAALRPRPPERRRPHPAKKKPRNL
IKEGSVCSGSGGGSPGGDNPISRLAVVRHAARARSPHYAVLEERGAARRREFLVRCDAPP
HSATGRGPNKKTAKRRAAHNVLLAMEMITNGSTGNTATVNGSELSTSASSDGSKSNGTDS
KNKVSDIAASETRQPVPGVLLMDYQQRGGTPQTQTTNGKNKRGVTDTVTNSTSNSTPAVS
NNSTTTSPGTTPGAKDQLMYLSQLLGFTVQFSDFPKRNHGEYLSLVSLSTEPPVMCHGGG
ASTAHSHEQCARAALRALALMGLDAPDHAAVPSTPSKPSVAITNGITE
(648 a.a.)
Sequence
(Nucleotide)
ATGTCAGGGCACCCGCCGCAGCACATGCCTGGACACCAAGCGATGCCCGCACACCATCAG
ATGCCGCCCCATCAGTTACACCGGGAGAACAGGCACGTAACGTTAACTAGGCGGGCGGAG
GGATGGGCGGGCATGGGCAGGCAATGGGCGGCATGGGCAGCATGGGAGTACCTCCACACC
ACGGACCTTCACAGAGACCTCCGCATCCGATCAGACCTATGCCACATCATCCACCAGGCC
AACATCACAATGTACCACCGCCGTAATTGCAAAGTTGCAGCAGGGTCGGTATCAGCGGGT
CCGGTATCCGGCAGCGCGGCCGTGCCCGAGGCGAGTGCAAACGTGGGCGCGGCGCTGAGC
GCGGGCGGCGCGGACTGCGCACCGGCGGCGGGCGACGGCGAGGCGCGTGCTCCCGCCGCC
GCGGCCAACAGTAAAGAGAAGACTCCCATGTGCCTGGTCAACGAACTGGCCAGGTACAAT
AAGATAAAACACCAATACCGCCTCACATCAGAAACAGGACCGGCCCACAAAAAAGTATTC
ACAGTAACACTTCGCTTGGGTGAAGCTGAAGAATATACAGCTGAGGGCTCGTCCATAAAG
CGCGCACAGCACGCGGCGGCGGGCGCGGCGCTGGCGGGCACCGCCTACCCCCCACCCCCG
CCCCGACCCGCGCCGCCCCTCACCGCACTGCATCATCATCACAGGAATTCTGGTACGGTC
ATGCCGACGGTGGAGCTGAACGCGTTGGCGATGAAGTTGTGCCAGCCCGCCATATACACG
TCGCTGCCGGCCGTGGCGGGGTGCGGGCGGGGCGCGCGGGGCCGCGGGTACGGCGGCGGC
GTGTTCGCGCGCGTGCTGCCAGCGCTCGTGTACCGCGTGCGCGTGGACGTATTCGTGACG
ACATGCACGGTGGGCGAGATAGAGACGGAGGGCGAGGGCAACGGCAAGAAGGTGTCGAAG
CGTCGAGCGGCCGAGCGCATGCTGGAGGAGATGCGGCACCGCTGGCCGCTCGCCGCGCTG
CGCCCGCGCCCGCCCGAGCGCCGCCGCCCGCACCCCGCCAAGAAGAAGCCGCGCAATCTA
ATCAAGGAGGGCAGCGTGTGCAGCGGGTCCGGCGGCGGCAGCCCGGGCGGCGACAACCCC
ATCTCCCGGCTGGCGGTGGTGCGGCACGCGGCCCGCGCGCGCTCGCCGCACTACGCCGTG
CTGGAGGAGCGCGGCGCCGCGCGACGCCGCGAGTTCCTCGTGCGCTGCGACGCGCCGCCG
CACTCCGCCACCGGCCGGGGACCCAACAAGAAGACCGCCAAGCGACGCGCCGCGCACAAT
GTACTTTTAGCAATGGAAATGATAACAAACGGCTCGACTGGCAACACAGCCACAGTCAAC
GGCTCCGAGCTCAGCACCAGCGCCTCTAGCGATGGAAGTAAATCTAATGGAACCGATAGC
AAAAACAAGGTTAGCGATATAGCGGCCAGTGAGACCCGACAGCCGGTTCCGGGCGTGCTA
CTCATGGATTACCAACAACGAGGAGGAACCCCACAAACACAAACGACTAACGGTAAGAAC
AAACGCGGTGTCACCGATACAGTTACAAATAGCACTAGTAATTCCACTCCAGCTGTGAGC
AATAACAGTACCACGACTTCGCCGGGGACGACGCCCGGAGCCAAAGATCAGCTCATGTAT
CTCTCGCAGCTCCTCGGATTTACAGTGCAGTTTTCAGATTTTCCTAAGCGCAACCACGGG
GAGTACCTGTCGCTGGTGTCGCTGTCGACCGAGCCGCCCGTGATGTGCCACGGCGGCGGC
GCCTCCACCGCGCACTCGCACGAGCAGTGCGCCCGCGCCGCCCTGCGCGCGCTCGCGCTC
ATGGGGCTGGACGCGCCCGACCACGCCGCTGTTCCGAGTACTCCGAGCAAACCGAGCGTC
GCCATCACAAACGGAATAACAGAGTGA
(1947 bp)

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