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Last updated: 2022/11/18

Silkworm GeneModel Entry

NameBGIBMGA001540-TA
JBrowseBomo_Chr21
chromosome_No.
Scaffold_id
Scaffold Length		chromo21
Bm_scaf7
8313734 bp
UniRef
UniRef50_Q92900 (68%/996)
Cluster: Regulator of nonsense transcripts 1; n=47; Eukaryota|Rep: Regulator of nonsense transcripts 1 - Homo sapiens (Human)
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
Orthologue
Sequence
(Amino Acid)
MSVEAFDPSSQSLTFLETEEGDFIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQ
VNGIGRIELSSKISNVTNTIPELQFEEEDEALYSNKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSETEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGEMHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFALDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRSLRRAAERRLLDAADVICTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNSQNPGSHFMSTSMFDAREAMVPGSIYDRARPPRDPLAYVGPERGALLHAPVPPAAFPT
QRLPPRMPRRRVPPRFSQEPLSQQPPLSLSQGASQPDFSQESTAPECPSQPDGLLSQDST
YQGGFRARCSQY
(1032 a.a.)
Sequence
(Nucleotide)
ATGAGTGTTGAAGCATTCGACCCAAGCTCGCAATCGCTCACGTTTCTGGAAACAGAGGAA
GGGGACTTTATTGGAGCAGACACTCAAGGCTCTGAGTTTGAGTTCACGGATTTTACATTA
CCCTCTCAGAGCCAGACACAGGCTTCACAACATGACCATGGGTTGTCTTCATCCAACCAG
GTTAACGGAATAGGACGTATAGAATTGTCGTCTAAAATCTCTAACGTGACTAATACGATA
CCGGAGCTGCAATTCGAAGAGGAAGATGAGGCTTTGTACAGCAACAAGGAACTTCCAGAT
CATGCTTGTAAATACTGTGGCATACACGACCCGGCCACAGTCGTTATGTGTAACATATGC
AACAAGTGGTTCTGTAATGGCCGCGGTAACACTTCAGGCTCTCATATCATCAACCATTTA
GTACGTGCAAAGCACAAGGAAGCTGCATTGCACCGTGACGGGCCACTTGGCGAAACCCTT
CTGGAATGTTACTCATGTGGTGCTCGGAATGTATTCGTACTCGGCTTTATACCAGCTAAA
GCTGATTCTGTTGTTGTGCTACTTTGCCGACAACCTTGTGCAGCTCAAAGCTCTTTGAAG
GATATGAACTGGGATCAGGAACAGTGGAAACCTCTGATATCTGATCGTGCCTTCCTGTCT
TGGTTGGTGAAAGTGCCATCAGAAACAGAACAAATGCGAGCTAGACAAGTAACTCCACAG
CAAATAGGCCGCTTAGAAGAGTTATGGCGTGACAATGTGGATGCTACTTTCCAAGATTTA
GAAAAACCAGGAGTAGATGAGGAACCACATCAGGTTTTGCTGAGGTATGAAGATGGGTAC
CAATACCAAAACATATTTGGTCCTCTTGTAAAGCTGGAAGCAGACTATGACAAGAGACTG
AAAGAGTCGCAAACTCAAGAGGGTATTGAAGTTCGTTGGGATGTTGGTCTGAACAAAAAG
ACTATTGCCTACTTCACATTGGCTAAAACTGATAGCGATATGAAGTTAATGCACGGCGAT
GAATTGAGATTGAGATATGTTGGTGAGATGCATAAAGCATGGTCAGGTGTCGGTCATGTC
ATAAAGGTCCCAGATAACTATGGTGACGATGTTGGACTCGAACTGAAGAGCGGTGCTGGG
GCCCCTCTAGATTGCACTTCTAATTTTGTTGTTGATTTCATCTGGAAGAGCACTTCTTTC
GACAGAATGCAACTGGCACTACGTAAATTCGCCTTAGATGATTCTTCAGTGTCTGGTTAT
ATATATCGGCGTCTGTTAGGCCACGAAGTTGAGGAAGTGCTGTTTCGAGTACATCTACCA
AAGCATTTCAGTGCTCCTAATTTGCCAGACCTTAACAGATCTCAGGTGTACGCAGTTAAG
CATGCTCTTCAGCGTCCCCTGTCTCTGATCCAAGGTCCTCCGGGAACCGGTAAGACTGTT
ACATCCGCTACTATAGTGTATCAGCTCGTCCGGCAAAACGGTGGACCAGTATTAGTTTGT
GCACCTTCGAACACCGCCGTCGATCAACTAACTGAAAAGATACACCGGACTGGACTCAAG
GTGGTCCGATTGTGTGCCAAGTCGCGAGAGGCAATGGAGTCTTCCGTATCGTTCTTGGCA
CTTCATGAACAAGCTCGCGCTCTCGGTTCTGCTGATAGCGAACTTCGGAAACTTACTAGA
CTCAAGGAAGAAGCCGGTGAACTTTCTGCCGCCGATGAAAGGCGATATCGTTCGTTGCGC
CGCGCCGCTGAGAGACGCTTACTCGACGCTGCGGATGTCATATGCACCACTTGCGTAGGC
GCCGGGGACCCTCGCGTTGCTCGTATGAGATTCCAGTCCATTTTGATCGATGAAGGCATG
CAGTCGACCGAGCCAGAATGTATGGTGCCTGTAGTTCTAGGAGCCAGACAGTTGATTCTA
GTCGGTGATCACTGTCAACTCGGTCCCGTGGTAATGTGTAAGAAAGCTGCAAAAGCCGGT
CTCAGCCAGAGTCTTTTTGAACGTTTGGTCGTTCTCGGAATCCGTCCGTTCCGACTCGAA
GTACAGTACCGCATGCATCCTGAACTTTCACGTTTTCCTTCAGACTTCTTTTACGAAGGG
TCCTTGCAGAATGGAGTCAGCGCCGAAGAAAGGCGTTTACACAAAATCGATTTTCCGTGG
CCCAGACCTGACAGGCCCATGTTCTTTTACGTCACTCAGGGACAGGAAGAGATCGCCGGC
TCCGGAACTTCGTACTTAAACAGAACTGAAGCTGCGAATGTTGAAAAACTCACAACTCGG
TTCTTAAAAGCAGGCGTCCGTCCCGAGCAGATCGGTATAATAACACCTTATGAGGGACAA
CGATCCTATCTTGTGCAGCACATGCAGTACCAGGGCAGTCTACATGCTAAACTGTACCAA
GAAATCGAGGTTGCCAGCGTCGATGCCTTCCAAGGGAGGGAAAAAGACATCATAATTATG
TCTTGCGTGCGGTCCAACGAACACCAAGGAATTGGCTTCTTGAGCGATCCGCGACGTCTT
AACGTCGCTCTCACGCGCGCCAAATACGGCCTCATCGTCGTCGGCAATCCGAAAGTGCTC
AGTAAACAGCCGCTCTGGAATCACTTGCTCGCTTTCTACAAAGAGCGCCGTGTACTTACC
GAAGGACCGCTTTCGAATCTGAAAGAATCCGCCATTCAGTTCGCAAAACCGAAGAAGCTG
GTGAACTCTCAGAATCCTGGCTCCCATTTCATGTCCACCTCGATGTTCGACGCGCGTGAA
GCCATGGTGCCGGGCTCCATCTATGACCGAGCGCGGCCTCCGCGAGACCCGCTGGCGTAC
GTGGGGCCGGAGCGCGGCGCCCTGCTACATGCGCCGGTGCCGCCAGCCGCCTTTCCAACT
CAACGCCTGCCGCCGCGCATGCCGCGCCGTCGCGTCCCGCCGCGCTTCTCGCAGGAGCCC
CTGTCGCAGCAGCCGCCGCTCTCACTGTCGCAGGGCGCATCGCAACCGGACTTCAGTCAG
GAGTCCACGGCGCCGGAGTGTCCGTCGCAACCGGACGGGCTGCTGTCGCAGGACTCTACG
TACCAGGGCGGGTTCAGAGCACGCTGCAGTCAGTACTGA
(3099 bp)

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