| Name | fmgV17f23f |
| JBrowse | Bomo_Chr15 |
chromosome_No.
Scaffold_id
Scaffold Length | chromo15
Bm_scaf42
3822572 bp |
| UniRef |
|
UniRef50_Q04561 (42%/42) |
| Cluster: Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-beta); Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP); Non-structural protein 3 (Nsp3); 3C-like serine proteinase (EC 3.4.21.-) (3CLSP) (Nsp4); Non-structural protein 5-6-7 (Nsp5-6-7); Non-structural protein 8 (Nsp8); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (Nsp9); Helicase (EC 3.6.1.-) (Hel) (Nsp10); Non-structural protein 11 (Nsp11); Non-structural protein 12 (Nsp12)]; n=33; Porcine respiratory and reproductive syndrome virus|Rep: Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-beta); Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP); Non-structural protein 3 (Nsp3); 3C-like serine proteinase (EC 3.4.21.-) (3CLSP) (Nsp4); Non-structural protein 5-6-7 (Nsp5-6-7); Non-structural protein 8 (Nsp8); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (Nsp9); Helicase (EC 3.6.1.-) (Hel) (Nsp10); Non-structural protein 11 (Nsp11); Non-structural protein 12 (Nsp12)] - Porcine reproductive and respiratory syndrome virus (strain Lelystad)(PRRSV) |
|
| Ontology |
| GO:0000166 |
F |
nucleotide binding |
| GO:0003723 |
F |
RNA binding |
| GO:0003724 |
F |
RNA helicase activity |
| GO:0003824 |
F |
catalytic activity |
| GO:0003968 |
F |
RNA-directed 5'-3' RNA polymerase activity |
|
| Orthologue |
|
Sequence
(Nucleotide) | GAATCATTTTACAGCAGGCACGGACGTCATGAAGATTTTCGTTGTTCTCACCGCAATTCT
GGCTTGTGCCAGTACACAAACTTTTGATGAACAGACGGAGATAAACGCACGTCAAGAGCG
CTTGGTCACTAACCAGGTTGCTTCCGCCATCGAAAATATCAAAAGCAAATAAGAGAAGCC
GGATTCGATCCACTGGACGTTGATAGAAGAGAAATTGTCATCCCTCCAGAGGAAGACTTC
CATGCACTTGCCGCTTTCGCCGAGGACATCAAAAGCACTGGATTAAGCAACATCGTCATT
ATCACTAACAATTTTAGCATCCTTAGCGCCCGTCTCAACTTAGTCCTGAGTCTACCTCGT
GTTGAAGCTAGCGTCGGTGCTGCCCGTGTTGAGCTTAATGTGTTCGATTACGAAGGCTAC
GCTAGCGCCAGTGGACGTGCCGCCATAAACAACCTTCGTGTTAGTGCTGAAGTGCGTATA
AGCATCAGCGTCGTCTCCGGAATTTCTATTAGGAGTCTCAATATAGACCTTACCTTAGGA
GGAGTTGAGGCGGATCTAAATGTTAATTTGTTTGGACGCGACCTCTCCGACACCATCACT
AACTTCCTCTCACAGACCGTGCCAACCACTATTGCCAATAACAGGACCACAATCAACAGG
TTTTTGGAATATACCCTGCTTCAAATAATCGAAGATTTTCTTCCCTAAGCAACAACNAAC
AACNAACATTAAACAACTAAGTAAATTNATGAAT
(754 bp) |
