Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000032-TA|BGIBMGA000032-
PA|IPR005135|Endonuclease/exonuclease/phosphatase, IPR000300|Inositol
polyphosphate related phosphatase
         (656 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    25   2.2  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    23   8.8  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 85  SLVDLKIWDFDLKAYVDVV-GKEIHSGNIENASTKEKAKFPQHFFPECKWSRKGFLRTRW 143
           +++ L ++ + L + + ++ G ++ + N  +  T E     Q F+PE    RK  LR   
Sbjct: 211 AIIHLSVFVYTLVSVILIIMGCDVVASN--SRKTAEMCYKLQGFYPEEAPQRKELLRFAS 268

Query: 144 TIRGTAVEFVNIHLF 158
             RG+  +F     F
Sbjct: 269 ESRGSVAKFTAADFF 283


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
          (isoform B) protein.
          Length = 96

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 87 VDLKIWDFDLKA 98
          VDL+ WD DL A
Sbjct: 40 VDLEFWDLDLNA 51


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,084
Number of Sequences: 317
Number of extensions: 5470
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 656
length of database: 114,650
effective HSP length: 61
effective length of query: 595
effective length of database: 95,313
effective search space: 56711235
effective search space used: 56711235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)