Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000047-TA|BGIBMGA000047-PA|IPR012464|Protein of unknown
function DUF1676
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   2.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   2.8  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    26   2.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   3.7  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   3.7  
SPCC338.06c |||heat shock protein Hsp20 family|Schizosaccharomyc...    26   3.7  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   4.9  

>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 56  METIPLLDGVDIVKVSKTDENVPISENEIDAALPRNLQDKNE 97
           +++IP+ + + +       E+  IS  ++DA L +++QD+ E
Sbjct: 295 LDSIPMNEQLKVSLKPLVSESSSISSKKLDAPLAKSIQDRLE 336


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)

Query: 19  DLSYKYLTKVYDECQKSDAIL 39
           +LS  +LT+VY+E QK++ +L
Sbjct: 864 NLSDSFLTEVYEEIQKNEIVL 884


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 63  DGVDIVKVSKTDE----NVPISENEIDAALPRN-LQDKNEALTQM 102
           D V++  +S T +    +VP S NE+D+ L +N    KNE L ++
Sbjct: 118 DSVELKPISLTKDQFIRSVPASRNEVDSFLQKNFFMVKNEFLYRL 162


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 42   LKKKAILFFDRAARMETIPLLDGVDIVKVSKTDENVPISENEIDAALPRNLQDKNEALTQ 101
            L++  +L  D  A +   P +D   ++++ +  EN P+  N + A    N+Q  N A   
Sbjct: 1407 LEQHPMLLTDLLAALT--PRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAVNHAYND 1464

Query: 102  ML 103
            +L
Sbjct: 1465 LL 1466


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 82  NEIDAALPRNLQDKNEALTQMLWD 105
           N+IDA  P +L  KN+ L Q + D
Sbjct: 289 NKIDAMRPEDLDQKNQELLQTIID 312


>SPCC338.06c |||heat shock protein Hsp20 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 65  VDIVKVSKTDENVPISENEIDAALPRNLQDKNEALTQMLWDKVASFANSRTIQLALP--- 121
           V++  + K +  V +  +++  +  R   ++ +A   + W +    A SRTI L  P   
Sbjct: 49  VEVPGIDKQNLKVDLHGSKLTISGERKKPEEEKAGPLIRWSERCVGAFSRTITLPQPVDE 108

Query: 122 KMTGAELNRGV 132
           K+  A LN G+
Sbjct: 109 KLIHASLNNGI 119


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 42  LKKKAILFFDRAARMETIPLLD-GVDIV-----KVSKTDENVPISENEIDAALPRNLQDK 95
           L K  I+ FD A  ++ + +    +D+      K SK+  ++    NE+  +  + LQD+
Sbjct: 224 LSKDCIVVFDEAHNIDNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDE 283

Query: 96  NEALTQMLWDKVASFANSRTIQLALPKMTGAELNRGV 132
            + L + L D  A+ AN     +A P +    L   V
Sbjct: 284 YQKLVRGLQD--ANAANDEDQFMANPVLPEDVLKEAV 318


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,199
Number of Sequences: 5004
Number of extensions: 20668
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 7
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)