Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000044-TA|BGIBMGA000044-PA|IPR012464|Protein of unknown
function DUF1676
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    29   0.90 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    28   1.6  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    27   2.1  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   2.7  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    26   6.3  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    25   8.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.4  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 64  GVKIYKSADVIQTGAPRSLDPLSRLKSYLETHSLSVEVKGTDILDAVTGAG-RALQDTVT 122
           G+K  KS  + +  AP    P+S L+  +ET S+   V G +  D VT  G + L+D  T
Sbjct: 357 GIKSAKSLGLNKDDAPVEGPPVSHLEKDVETPSVHDSVLGFN--DTVTNLGKKGLKDGTT 414

Query: 123 S 123
           +
Sbjct: 415 N 415


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 22  TSYSENDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAPRS 81
           +S + ++  +CL K    C + K F Y+D+   Q    + T G   Y   +   T A  S
Sbjct: 761 SSRAPSEAINCLSKLAFQCHETKRFLYIDE--KQSSEISFTSGELEYSDPN-DPTKATHS 817

Query: 82  LDPLSRLKSYLETHSL 97
           + P S + S + T S+
Sbjct: 818 VLPWSAMWSIISTQSV 833


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 51   KYIGQKDSFALTDGVKIY-KSADVIQTGAPRSLDP-LSRLKSYLETHS 96
            K I  KD   L     +  K  D +QTGA ++L P ++ +K Y+ET S
Sbjct: 1592 KEISNKDKLLLQSIFLLSRKLQDSVQTGADQALSPEMNTVKKYVETIS 1639


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 29  LDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAPRSLDPL 85
           LD  L+K P+  ++ ++    D+ + +K+S  LT+  +     D+   G  R ++ L
Sbjct: 769 LDQHLEKTPSQYIQWRYAGGQDREVSEKESRKLTEEDRAQLQRDITVNGERRRVEAL 825


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 68  YKSADVIQTGAPRSLDPLSRLKSYLETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVD 126
           Y + D I  G P       +L    ++     ++KGT ++DA  G G A    +  ++D
Sbjct: 186 YGTPDAI--GEPTERGYFEKLSKAYQSLMTGKKIKGTVLIDAANGVGAAKIKELAKYID 242


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 81  SLDPLSRLKSYLETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKKKA 140
           S+  L +L+ Y   HS+S+E+    +L     +          F  DD  EE    +K+A
Sbjct: 490 SVQSLKQLEVYPIRHSVSIEMPSEKLLSPRLYSSSTPSSPTKGFQKDD--EEDSENRKQA 547

Query: 141 SKI 143
            K+
Sbjct: 548 DKV 550


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 4  TSFIFALIAATSALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTD 63
          +SF+    A+ S   A +  Y +N L   LKK   SCL    F   +K++  ++++ L+ 
Sbjct: 33 SSFLLQPRASDSRPDALEGKYDKNVLARALKKSRDSCLNGALF---EKFL-PEENYKLSG 88

Query: 64 G 64
          G
Sbjct: 89 G 89


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 119 DTVTSFVDDDAAEESRGKKKKASKI 143
           DT +SF D D++EE   ++K+AS++
Sbjct: 26  DTESSFSDADSSEEEFVEEKEASQV 50


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 43  NKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAPRSLDPLSRLKS 90
           N F + +D       +  L+ G ++Y   + + T A  S+DPL  L +
Sbjct: 372 NTFIASIDGNSSNIPTKELSGGARLYSIFNNVFTTALNSIDPLQNLST 419


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 10  LIAATSALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSYVDKY 52
           L   +S + A  T   EN L+ C K    SC + +F  Y+ K+
Sbjct: 871 LFVESSTIYASSTGGYENILNICEKYLKGSCSRLEFRKYLQKF 913


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,140
Number of Sequences: 5004
Number of extensions: 28570
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 10
length of query: 261
length of database: 2,362,478
effective HSP length: 71
effective length of query: 190
effective length of database: 2,007,194
effective search space: 381366860
effective search space used: 381366860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)