Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000047-TA|BGIBMGA000047-PA|IPR012464|Protein of unknown
function DUF1676
         (178 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)                 29   1.6  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_34958| Best HMM Match : PkinA_anch (HMM E-Value=4.5)                28   3.8  
SB_33382| Best HMM Match : DUF815 (HMM E-Value=5.5)                    28   5.0  
SB_37915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 52   RAARMETIPLLDGVDIVKVSKTDENVPISENEIDAALPRNLQD-KNEALTQMLWDKVASF 110
            R   +  +  +  V++V  +  D  VP+ E E     PR++ D   E    +LW  + +F
Sbjct: 1088 RVPAISRLQKIHNVEVVLKALKDHGVPVGEGEGSGITPRHIVDGHREKTLNLLWMIIVNF 1147


>SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)
          Length = 705

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 18  EDLSYKYLTKVYDECQKSDAILPCLKKKAILFFDRAARMETIPLL-DGVDIVKVS--KTD 74
           ++ S++   KV+   QK   I+ CL+ K   FF   AR+ ++P +  G  + K S  K+ 
Sbjct: 52  KNASFENYLKVFCGSQKDTVIIGCLRNKLDHFFVDLARVFSMPFICIGETLAKTSLQKSL 111

Query: 75  ENVPISENEIDA 86
              P S  +I A
Sbjct: 112 TKYPNSRGQIIA 123


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 44  KKAILFFDRAARMETIPLLDGVDIVKVSKTDENVPISENEIDAAL 88
           KKAILF D  A +E +  L  +    VS+ D+ VP+  +E   AL
Sbjct: 528 KKAILFDDHLA-VEFLLALSLIFFTDVSQQDDGVPMETDETTQAL 571


>SB_34958| Best HMM Match : PkinA_anch (HMM E-Value=4.5)
          Length = 342

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 43  KKKAILFFDRAA-RMETIPLLDGVDIVKVSKTDENVPISENEIDAALPRNLQDKNEALTQ 101
           K   I   +R++ R+ ++ +L     +K  K D +   + +E+ A L   LQDKNEAL++
Sbjct: 148 KTNKISVLNRSSERLTSVAVLTNCTALKSPKRDSSQMETSDEL-ADLKDELQDKNEALSK 206


>SB_33382| Best HMM Match : DUF815 (HMM E-Value=5.5)
          Length = 219

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 52  RAAR--METIPLLDGVDIVKVSKTDENVPISENEIDAALPRNLQ 93
           R AR  +++ P L G+DI +V   D  + +  N IDA L R ++
Sbjct: 124 RVAREAIQSWPHLSGLDIPEVDSRDVTMLLGANMIDAILQREVR 167


>SB_37915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 41  CLKKKAILFFDRAARMETIPLLDGVDIVKVSKTDENVPISENEIDAALPRNLQDKNEALT 100
           CL K+ I      A    + LL G   +KV +T E V  +   +  AL + LQ + + L 
Sbjct: 31  CLTKENIYSKFPQAFFGGVGLLKGQYCIKVDRTVEPVQHAPRRVPVALSKRLQSELDRLV 90

Query: 101 Q 101
           +
Sbjct: 91  E 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,005,231
Number of Sequences: 59808
Number of extensions: 128104
Number of successful extensions: 350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 7
length of query: 178
length of database: 16,821,457
effective HSP length: 78
effective length of query: 100
effective length of database: 12,156,433
effective search space: 1215643300
effective search space used: 1215643300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)