Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000035-TA|BGIBMGA000035-PA|undefined
         (164 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)                      29   2.5  
SB_23780| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)                   28   3.3  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   4.4  
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.8  
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)     27   5.8  
SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)                    27   7.6  

>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
          Length = 378

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 69  VHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANKR 102
           V ++ + T QP P G F+ +P     Q TQ +KR
Sbjct: 344 VKELWQATWQPCPEGVFKEKPVTLKAQATQESKR 377


>SB_23780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 69  VHQMTKPTLQPKPMGTFRTEP--KLKDEQTTQANKRRQKKWNSKVVR--NRTPFQNLQRN 124
           V+    PT   KP+GT   EP   +K+E     N    +  N++ +R  N  P +N+   
Sbjct: 47  VNNKPLPTGNNKPLGTVNNEPFRTVKNEALRTGNNEPLRTVNNESLRTGNNEPLRNVN-- 104

Query: 125 RFRRSLESDNLFVIRDLDEIEFLGKDNDSV-TVN 157
              + L + N   +R+++       +N+S+ TVN
Sbjct: 105 --NKPLRTGNNEPLRNVNNKPLRTGNNESLRTVN 136


>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
          Length = 531

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 86  RTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDNLFVIRDLDEIE 145
           RT   L +E+  Q  +    KW +K +++R   +  +  R R  LE+ +  + +DL E E
Sbjct: 45  RTAALLPEEELAQMEET--DKWLAKELQDRLQAEECRELRTRSELEARDAQIAKDLQERE 102


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 124 NRFRRSLESDNLFVIRDLDEIEFLGKDNDS 153
           N  RR ++SD  + + DLDE+E  G   ++
Sbjct: 45  NAKRRRIDSDYAYALDDLDELEVYGAQQEA 74


>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 729

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 84  TFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDNLFVIRD 140
           + RT+ + K E+T+ A +++QK+   K+  N    Q L+++   ++ E++N   I++
Sbjct: 245 SLRTQVR-KAEETSNALQKQQKELEIKIKNNENDVQRLKKD--LQAAEAENELAIKE 298


>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
          Length = 342

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 68  YVHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWN-SKVVRNRTPFQNLQRNRF 126
           Y+ QM  PT +P  +  F T+ + K+E   Q     ++ WN +++  N T +  +++   
Sbjct: 10  YIMQMIAPTYEPLTLYDFHTQDE-KNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTL 67

Query: 127 RRSL-ESDNLFVIRDLDEIEFLGKDNDSVTVNAHVKRYW 164
           R  L  + ++ V+   ++   L + N  + +N+  +  W
Sbjct: 68  RSKLIWTPDISVLNSANKDMDLREKNIRLFINSAGEVLW 106


>SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)
          Length = 270

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 87  TEPKLKDEQTTQANKRRQKK 106
           TEP+ K+E T +A KRR+++
Sbjct: 230 TEPRRKNEDTEEAQKRRKQR 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,420,646
Number of Sequences: 59808
Number of extensions: 206569
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 7
length of query: 164
length of database: 16,821,457
effective HSP length: 77
effective length of query: 87
effective length of database: 12,216,241
effective search space: 1062812967
effective search space used: 1062812967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)