GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein
L35
         (176 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24090.1 68415.m02877 ribosomal protein L35 family protein co...    30   1.0  
At5g45590.1 68418.m05601 expressed protein                             29   1.3  
At1g58070.1 68414.m06581 expressed protein                             27   5.4  
At5g48575.1 68418.m06008 hypothetical protein                          27   7.1  
At3g60070.1 68416.m06708 lactose permease-related contains weak ...    27   7.1  
At1g80810.1 68414.m09481 expressed protein similar to androgen-i...    27   7.1  
At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial...    27   9.4  

>At2g24090.1 68415.m02877 ribosomal protein L35 family protein
           contains Pfam profile PF01632: ribosomal protein L35
          Length = 145

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 77  FSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLR 125
           F+ K  K KT KA  KRF     G  +R + G+   L KK+  NKR+LR
Sbjct: 70  FAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKN--NKRKLR 116


>At5g45590.1 68418.m05601 expressed protein
          Length = 173

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/55 (38%), Positives = 27/55 (49%)

Query: 72  RSVIKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQ 126
           R+ I   +KK K K   +   RF  L+ G   R K G+      KS  +KRRLRQ
Sbjct: 100 RTPITSKVKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQ 154


>At1g58070.1 68414.m06581 expressed protein
          Length = 284

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 45  RSLLPQNSLLANKQILDILMKI--DFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLH 98
           RSLLP +     ++I+D+L K+  + T T++ +K  LK+ + +T  A+      LH
Sbjct: 115 RSLLPPSPQGPKEEIMDVLKKLEAEITETKTEVKM-LKERESETEVALATLNAELH 169


>At5g48575.1 68418.m06008 hypothetical protein
          Length = 268

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 112 KLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE 154
           ++  KS+ NK +   ++ C + Q T + K +TK+ +    +VE
Sbjct: 205 RIGTKSAKNKGKKDGYLTCTTAQQTEIKKTITKWEQVTTKFVE 247


>At3g60070.1 68416.m06708 lactose permease-related contains weak
           similarity to Lactose permease (Lactose-proton symport)
           (Lactose transport protein). (Swiss-Prot:O33814)
           [Staphylococcus xylosus]
          Length = 456

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 1   MLRFLSTAVRYARCLPASPLHN-AITLTTKDVRHFSAFKNI 40
           +L  +S +  +  CLP S LHN ++TL T     F+A  NI
Sbjct: 91  LLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMFAAIFNI 131


>At1g80810.1 68414.m09481 expressed protein similar to
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]; similar
           to bimD (GI:168025) [Emericella nidulans]
          Length = 826

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 115 KKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFH 167
           K     +R +R+ V  +     L+ K V  +W   K + E     Y TR++ H
Sbjct: 536 KSHPTRRRTVRKEVESDGFGEDLVGKRVNIWWPLDKTFYEGVIDSYCTRKKMH 588


>At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial,
           putative / H(+)-transporting two-sector ATPase, delta
           (OSCP) subunit, putative identical to SP|Q96251; similar
           to SP|P22778 ATP synthase delta chain, mitochondrial
           precursor (EC 3.6.3.14) (Oligomycin sensitivity
           conferral protein) (OSCP) {Ipomoea batatas}; contains
           Pfam profile PF00213: ATP synthase F1, delta subunit
          Length = 238

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 70  PTRSVIKFSLKKGKRKTVKAVIKRFFRL 97
           PT++ +    + GK K + A++K+F +L
Sbjct: 124 PTKNFLSLLAENGKLKNLDAIVKKFMQL 151


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,997,652
Number of Sequences: 28952
Number of extensions: 150076
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 7
length of query: 176
length of database: 12,070,560
effective HSP length: 76
effective length of query: 100
effective length of database: 9,870,208
effective search space: 987020800
effective search space used: 987020800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)