Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000044-TA|BGIBMGA000044-PA|IPR012464|Protein of unknown
function DUF1676
         (261 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18510.1 68418.m02185 hypothetical protein                          28   7.3  
At4g23590.1 68417.m03398 aminotransferase class I and II family ...    27   9.6  
At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp...    27   9.6  
At1g58050.1 68414.m06579 helicase domain-containing protein cont...    27   9.6  
At1g31500.3 68414.m03859 endonuclease/exonuclease/phosphatase fa...    27   9.6  
At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase fa...    27   9.6  
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa...    27   9.6  

>At5g18510.1 68418.m02185 hypothetical protein
          Length = 702

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/59 (30%), Positives = 24/59 (40%)

Query: 21  DTSYSENDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAP 79
           D   S +  DDC+        +NK+FS VDK  G   S +L    + Y   D      P
Sbjct: 517 DAEISTDKEDDCMTVAQLIRSRNKYFSDVDKKTGGDASESLGKRSRRYMLVDSDDDSGP 575


>At4g23590.1 68417.m03398 aminotransferase class I and II family
           protein similar to nicotianamine aminotransferase from
           Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam
           profile PF00155 aminotransferase, classes I and II
          Length = 424

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 74  IQTGAPRSLDPLSRLKSYLETHSLSVEVKGTDILDAV 110
           I    PR  D   RLKS+ E HS+ VE      ++ V
Sbjct: 387 IDMETPRLEDAFERLKSFCERHSVIVEASSLKDVNGV 423


>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
           subunit, mitochondrial (PDHE1-A) identical to SP|P52901
           Pyruvate dehydrogenase E1 component alpha subunit,
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
           {Arabidopsis thaliana}
          Length = 389

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 60  ALTDGVKIYKSADVIQTGAPRSLDPLSRLKSYLETHSLSVEVKGTDI 106
           +++D    Y++ D I +G  +  DP+ R+K  + +H L+ E +  D+
Sbjct: 292 SMSDPGSTYRTRDEI-SGVRQERDPIERIKKLVLSHDLATEKELKDM 337


>At1g58050.1 68414.m06579 helicase domain-containing protein
           contains similarity to SP|P24785 Dosage compensation
           regulator (Male-less protein) (No action potential
           protein) {Drosophila melanogaster}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 1417

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)

Query: 15  SALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVI 74
           SALP  D+   END  D +K +  +  +N   +     + QK      +  K+ K  D++
Sbjct: 537 SALPMVDSCVKENDDLDVVKSNHRA-RRNSSMAAECSSLKQKQE----NKKKMQKYKDML 591

Query: 75  QTGAPRSLDPLSRLKSYLETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESR 134
           +T   R+  P+S +K  +      ++ K   ++   TG+G+  Q  V  F+ DD  +   
Sbjct: 592 KT---RAALPISEVKKDI---LQKLKEKDVLVVCGETGSGKTTQ--VPQFILDDMIDSGH 643

Query: 135 G 135
           G
Sbjct: 644 G 644


>At1g31500.3 68414.m03859 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 283

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/69 (30%), Positives = 28/69 (40%)

Query: 27  NDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAPRSLDPLS 86
           NDL D +K D  SC + K  +  +    +KDS  L D +   K   V    A R   P  
Sbjct: 162 NDLVDSIKADSVSCSEQKIETSNEGKDSRKDSRDLNDPLVRLKRDCVGIMAAFRINKPFQ 221

Query: 87  RLKSYLETH 95
            +     TH
Sbjct: 222 HIVIVANTH 230


>At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 383

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/69 (30%), Positives = 28/69 (40%)

Query: 27  NDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAPRSLDPLS 86
           NDL D +K D  SC + K  +  +    +KDS  L D +   K   V    A R   P  
Sbjct: 162 NDLVDSIKADSVSCSEQKIETSNEGKDSRKDSRDLNDPLVRLKRDCVGIMAAFRINKPFQ 221

Query: 87  RLKSYLETH 95
            +     TH
Sbjct: 222 HIVIVANTH 230


>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 388

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/69 (30%), Positives = 28/69 (40%)

Query: 27  NDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAPRSLDPLS 86
           NDL D +K D  SC + K  +  +    +KDS  L D +   K   V    A R   P  
Sbjct: 167 NDLVDSIKADSVSCSEQKIETSNEGKDSRKDSRDLNDPLVRLKRDCVGIMAAFRINKPFQ 226

Query: 87  RLKSYLETH 95
            +     TH
Sbjct: 227 HIVIVANTH 235


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,290,486
Number of Sequences: 28952
Number of extensions: 143675
Number of successful extensions: 394
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 7
length of query: 261
length of database: 12,070,560
effective HSP length: 80
effective length of query: 181
effective length of database: 9,754,400
effective search space: 1765546400
effective search space used: 1765546400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)