GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000006-TA|BGIBMGA000006-PA|IPR012464|Protein of unknown
function DUF1676
         (270 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58360.1 68418.m07307 ovate family protein 69% similar to ova...    35   0.050
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    30   1.9  
At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family...    29   2.5  
At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putativ...    29   3.3  
At5g14240.1 68418.m01664 expressed protein                             28   7.6  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    28   7.6  

>At5g58360.1 68418.m07307 ovate family protein 69% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 296

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 57  IKITEDLSIVKTGTVEDDESADPRL----AKDPAYEMFDKVD-KFLQSHTLRVKVPEEIT 111
           I I ++LS+ K   V +D S  P L    AK+P +EM  +   K  ++H+  +K+P +I 
Sbjct: 146 IDIKDELSVRKLDDVPEDPSVSPNLSPETAKEPPFEMMTQQKLKKPKAHSSGIKIPTKIV 205

Query: 112 KSAASE 117
           +    E
Sbjct: 206 RKKKKE 211


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 66  VKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVK 105
           ++ G   DD+  D  L  D   EM  + DK +  H L+ K
Sbjct: 530 LRCGAARDDDEDDYPLLSDVEMEMESEADKIISEHLLKFK 569


>At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 503

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 15  SATYPASKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIV 66
           SAT   ++ V+ +   CL Q   E  +PRTLQ +S  AN  + +I + + I+
Sbjct: 163 SATCLRNRSVEALATACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKIL 214


>At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putative
           similar to Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] (EC 2.4.1.15) (Trehalose-6-phosphate
           synthase) from {Kluyveromyces lactis} SP|Q07158,
           {Saccharomyces cerevisiae} SP|Q00764; contains Pfam
           profiles PF00982: Glycosyltransferase family 20,
           PF02358: Trehalose-phosphatase
          Length = 856

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 39  CVKPRTLQWMSSV--ANDDEIKITEDLSIV--KTGTVEDDESADPRLAKDPAYEMFDKVD 94
           C  P   +W S V       ++ T+  SI   ++  V   + ADP      A EM D ++
Sbjct: 668 CYSPTDTEWRSMVEPVMRSYMEATDGTSIEFKESALVWHHQDADPDFGSCQAKEMLDHLE 727

Query: 95  KFLQSHTLRVK--------VPEEITKSAASEYVPRSLL-TDLPSELDMPLDGEDEAE 142
             L +  + VK         P+ ++K  A+E V R ++    P E+ M + G+D ++
Sbjct: 728 SVLANEPVVVKRGQHIVEVKPQGVSKGLAAEKVIREMVERGEPPEMVMCI-GDDRSD 783


>At5g14240.1 68418.m01664 expressed protein
          Length = 256

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 1   MARIIVLLSIVAFASATYPASKLVKNIYNECLSQYSVECVKPRTL 45
           +A   +LL  +    + YPA+K VK I  +C+  Y  +C  P  L
Sbjct: 132 VAECSLLLGCLDELGSRYPATKFVKIISTDCIPNYP-DCNLPTLL 175


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 50  SVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFL-QSH-------- 100
           S+A+DD + +++D   ++   +E  +     + + P  E+ D ++K + Q H        
Sbjct: 101 SIADDDVLGVSQDSQTLEKSELESTDDGPEEVVEIPKSEVEDSLEKSVDQQHPGNGHLES 160

Query: 101 --TLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEV 143
               +V+  EE+ +   SE   + L  +   E ++ ++ + E +V
Sbjct: 161 GLEGKVESKEEVEQLHDSEVGSKDLTKNNVEEPEVEIESDSETDV 205


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,128,162
Number of Sequences: 28952
Number of extensions: 172196
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 6
length of query: 270
length of database: 12,070,560
effective HSP length: 80
effective length of query: 190
effective length of database: 9,754,400
effective search space: 1853336000
effective search space used: 1853336000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)