GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005460-TA|BGIBMGA005460-PA|IPR002877|Ribosomal RNA
methyltransferase RrmJ/FtsJ
         (298 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 41  GVLRAVDLCAAPGSWSQV 58
           GV+RAV  C A G++S +
Sbjct: 356 GVMRAVKRCNATGAFSWI 373


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 204 NPPEDYVPNMVNPLLDHKYFDLDSDFNSFTGI 235
           +PPE  VP + +  +   Y  L  D +   G+
Sbjct: 179 DPPEPPVPTVTSACVGSAYTPLKEDHDDHYGV 210


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 216  PLLDHKYFDLDSDFNS 231
            PL +H Y  +DSD+++
Sbjct: 1329 PLSEHIYSSIDSDYST 1344


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,722
Number of Sequences: 429
Number of extensions: 3702
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 298
length of database: 140,377
effective HSP length: 57
effective length of query: 241
effective length of database: 115,924
effective search space: 27937684
effective search space used: 27937684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)