Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005459-TA|BGIBMGA005459-PA|IPR010916|TonB box,
N-terminal, IPR001678|Bacterial Fmu (Sun)/eukaryotic nucleolar
NOL1/Nop2p, IPR002478|PUA
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 93 5e-20
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 71 2e-13
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 56 8e-09
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 54 3e-08
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 31 0.36
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 29 0.84
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 27 4.5
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 27 5.9
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 26 7.8
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 93.5 bits (222), Expect = 5e-20
Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 132 SRLPVVNESVCPKGELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKNQA 191
S++P+ G +LQ S + + Q NE ILDM +APG K T++A + KN
Sbjct: 306 SQVPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTG 365
Query: 192 CITALDKTLEKTERIRETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKIL 251
I A D +T+ + GV +D K +E + G FD++L
Sbjct: 366 IIFANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNE----VIGG-------FDRVL 414
Query: 252 LDAPCSGLG--QRPQLINM-MSPKMIKSYKFLQRKLISEAVKLL----KVGGKLVYSTCT 304
LDAPCSG G + Q + S + + LQR+L+ A+ + K GG +VYSTC+
Sbjct: 415 LDAPCSGTGVIYKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCS 474
Query: 305 ITEDENEGLVSWVLEKFPCLK 325
IT DE+E ++ + L+K P +K
Sbjct: 475 ITVDEDEAVIQYALKKRPNVK 495
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 71.3 bits (167), Expect = 2e-13
Identities = 61/189 (32%), Positives = 90/189 (47%), Gaps = 18/189 (9%)
Query: 145 GELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEM----SKNQACITAL---- 196
G++ Q S+V ++N +S+ +LDMCAAPG+KT L E +K + T L
Sbjct: 123 GDINRQESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGI 182
Query: 197 ----DKTLEKTERIRETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILL 252
D ++ + + V DA+ + L +G F FD+IL
Sbjct: 183 VIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFH-LSSPDGKKFLK--FDRILA 239
Query: 253 DAPCSGLG---QRPQLINMMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITEDE 309
D PCSG G + L N S K Q K++ ++LL+ GG+LVYSTC++ E
Sbjct: 240 DVPCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIE 299
Query: 310 NEGLVSWVL 318
NE +VS VL
Sbjct: 300 NEAVVSAVL 308
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 56.0 bits (129), Expect = 8e-09
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 247 FDKILLDAPCSGLGQRPQLINMM---SPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTC 303
FD+IL D PCSG G + +++ S S LQ +++ ++LLKVGG LVYSTC
Sbjct: 264 FDRILADVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTC 323
Query: 304 TITEDENEGLVSWVLE 319
+I ENE +V+ L+
Sbjct: 324 SINPIENEAVVTAALK 339
Score = 35.9 bits (79), Expect = 0.010
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 130 PVSRLPVVNESVCPKGELLLQNLPSIVCGWVVNAQSNEYILDMCAAPGNKTTHLAEMSKN 189
P+ RL S G + Q S++ ++ + + ILDMCAAPG+KT L E
Sbjct: 124 PLKRLQRFLVSENEAGNINRQEAVSMLPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVYK 183
Query: 190 QACI 193
+A I
Sbjct: 184 KANI 187
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 54.4 bits (125), Expect = 3e-08
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 21/198 (10%)
Query: 135 PVVNESVCPKGELLLQNLPSIVCGWVVNAQSNEY--ILDMCAAPGNKTTHLAEMSKNQAC 192
P+V S+ +G++++Q+ S V+ + I+D CAAPGNKTTHLA ++
Sbjct: 178 PIVENSLYKEGKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSH 236
Query: 193 ITALDKTLEKTERIRETCQIQGVTCVTAYAFDATKCHSEESLGIANGPPFPSNCFDKILL 252
I A ++ ++ + +R+ I G VT D T + L ILL
Sbjct: 237 IFAFERDAKRVQTLRKMVGISGANNVTIEHQDFTLTDPKSDL---------YRNVTHILL 287
Query: 253 DAPCSGLG---QRPQLIN-----MMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCT 304
D CSG G ++ L+ + +++ Q ++ A++ + YSTC+
Sbjct: 288 DPSCSGSGIVSRQDYLLGNEQDVTEDTERLENLCSFQSTILKHALQFPNC-RHVTYSTCS 346
Query: 305 ITEDENEGLVSWVLEKFP 322
+ ENE +V VL + P
Sbjct: 347 VHRLENEQVVCEVLSQEP 364
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 30.7 bits (66), Expect = 0.36
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 264 QLINMMSPKMIKSYKFLQRKLISEAVKLLKVGGKLVYSTCTITEDENEGLVSWV 317
Q+I +++ K + FL R LI EA V + + T+T+D ++G+++W+
Sbjct: 178 QVIKVLNQK--NTLVFLSRLLIPEAKIPQSVQEMALQAFFTLTDDNDDGIITWI 229
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 29.5 bits (63), Expect = 0.84
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 103 TGYLKMLRSELFDNGIKPSGIAVHTLMPVSRLPVVN 138
TGY +++ L +NG+ +G+ V T + S +P+V+
Sbjct: 1725 TGYKDIVQGLLAENGVSEAGVDVMTSIVSSTIPIVS 1760
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 146 ELLLQNLPSIVCGWVVNAQSNEYILDM 172
+LL++ PS+V WV ++Q++E +L +
Sbjct: 183 DLLVEKQPSVVEAWVCSSQTHEDLLKL 209
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 22 DCLILERWSESVIVDPTGKEVIVDALCAAAVLRGAHVFAPGVMGLPSSLHLDEKVDIYGD 81
D + +E+W+ S+ P G E V + +A + A + P L + +D V + GD
Sbjct: 735 DWVQIEQWAGSMRRSPIGFEPFVTEILSAGNKKEAAKYIPRCTQLTTQEKVDMWVQV-GD 793
Query: 82 LEKKCKRGLKS 92
++ + KS
Sbjct: 794 VKSASEEAAKS 804
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 20 KPDCLILERWSESVIVDPTGKEVI 43
K D LI++RW+E + V P EV+
Sbjct: 232 KSDWLIIDRWNEMLSVQPDMIEVL 255
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,038
Number of Sequences: 5004
Number of extensions: 73894
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 12
length of query: 386
length of database: 2,362,478
effective HSP length: 74
effective length of query: 312
effective length of database: 1,992,182
effective search space: 621560784
effective search space used: 621560784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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