GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005459-TA|BGIBMGA005459-PA|IPR010916|TonB box,
N-terminal, IPR001678|Bacterial Fmu (Sun)/eukaryotic nucleolar
NOL1/Nop2p, IPR002478|PUA
         (386 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 138  NESVCPKGELLLQNLPSIVCG----WVVNAQSNE 167
            N  + P GEL+L NL S   G     V NAQ N+
Sbjct: 1360 NIQILPSGELMLSNLQSQDGGDYTCQVENAQGND 1393


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 138  NESVCPKGELLLQNLPSIVCG----WVVNAQSNE 167
            N  + P GEL+L NL S   G     V NAQ N+
Sbjct: 1356 NIQILPSGELMLSNLQSQDGGDYTCQVENAQGND 1389


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 47  LCAAAVLRGAHVFAPGVMGLPSSLHLDEKVDIYGD 81
           + A+ V    H     V GLP   H+D+K  + G+
Sbjct: 472 IAASKVGSAEHSARLNVYGLPFIRHMDKKAIVAGE 506


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,610
Number of Sequences: 429
Number of extensions: 4544
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 386
length of database: 140,377
effective HSP length: 59
effective length of query: 327
effective length of database: 115,066
effective search space: 37626582
effective search space used: 37626582
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)