GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005458-TA|BGIBMGA005458-PA|IPR000192|Aminotransferase,
class V
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.4  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   7.7  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   7.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   7.7  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 59   EMAKRYGINTITTTVPMNETFSLQQLENELRKHRPTALFIVHGDSSTGIV--QNLKSV 114
            E+   +  +TIT T+P+N  F  +   NEL       + +V+   S  ++  Q LKSV
Sbjct: 3573 EVQTTFAKDTITITLPLNIIFFSEVQSNELENKASKFMNVVNFTLSISLLETQMLKSV 3630


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 226 KPEDRLMTVTTVVLPKGYDYLQFSKYM 252
           K  DR   +  VV+P  YDY+  +K++
Sbjct: 87  KRHDRSFALHKVVVPDDYDYIPLNKHI 113


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 228 EDRLMTVTTVVLPKGYDYLQFSKYMREKYNILIFP-----GIGQTVGKT 271
           ED L+    V++  G+D L + K   EK  I +FP     G+G  V ++
Sbjct: 703 EDMLVGSVDVMVTNGFDRLNWPKRKGEKQYIDMFPIHRISGVGSEVNES 751


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 49  KRGFWCERALEMAKRYGINTI 69
           KRG       E+AK+YGIN+I
Sbjct: 804 KRGLSINNLEELAKKYGINSI 824


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,885
Number of Sequences: 5004
Number of extensions: 46776
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 6
length of query: 305
length of database: 2,362,478
effective HSP length: 72
effective length of query: 233
effective length of database: 2,002,190
effective search space: 466510270
effective search space used: 466510270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)