GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005458-TA|BGIBMGA005458-PA|IPR000192|Aminotransferase,
class V
         (305 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.8  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 162 ISPVAFSDRALYHHTLSS 179
           + P+  +DR LY H+L+S
Sbjct: 253 LGPIRNNDRILYFHSLAS 270


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 16  NCDTVLALSGSGHGGMETVINNLVGPGETLLVAKRGFWCERALEMAKRYGI 66
           NC TV  +      G+ T  + +V P +TL   +       A+ + + +GI
Sbjct: 54  NCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYNMLRTTAINVIRHFGI 104


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 174 HHTLSSPLLWALRQCLQEVIKETLPRSWARHAATTKHFLK 213
           H +L + LLW  ++C    +      S    A TTK   K
Sbjct: 107 HESLKNVLLWDFQECTFISVNGKEVHSGNIEAVTTKEKAK 146


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,898
Number of Sequences: 429
Number of extensions: 3190
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 305
length of database: 140,377
effective HSP length: 57
effective length of query: 248
effective length of database: 115,924
effective search space: 28749152
effective search space used: 28749152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)