GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005454-TA|BGIBMGA005454-PA|IPR011044|Quinoprotein amine
dehydrogenase, beta chain-like, IPR001841|Zinc finger, RING-type,
IPR001258|NHL repeat, IPR001298|Filamin/ABP280 repeat, IPR013017|NHL,
IPR000315|Zinc finger, B-box
         (680 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.88 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   6.2  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 425 GKDQLSQPVALARCPKRKEIYVLDAGNSRVKVLD 458
           G  QL Q +    C KRKE+ ++   +SR + +D
Sbjct: 68  GAIQLRQLLKRQLCEKRKEVSIITEDSSRKQTID 101


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 307 GRVRTSTTFPGLCSLQLESSCVSGLEVVVVLRTVDYHGEARSTGGDPVTAAATLDDAPLP 366
           G ++  TT P   SL  ESS  +       +     H     TG  P  + ++   +P  
Sbjct: 25  GTIQACTTSPATASL--ESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAA 82

Query: 367 CTVTDL 372
            T + +
Sbjct: 83  RTTSSM 88


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 13   SINYEDFNESFLTCGTCLCTYDGGEHTPKLLPCSHTV 49
            ++ YED     L   T   T+DG ++  +L PC H V
Sbjct: 1435 NVFYEDETSCMLD-KTRAQTFDGKDYPLRLGPCWHAV 1470


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,825
Number of Sequences: 429
Number of extensions: 6401
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 680
length of database: 140,377
effective HSP length: 62
effective length of query: 618
effective length of database: 113,779
effective search space: 70315422
effective search space used: 70315422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)