GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005453-TA|BGIBMGA005453-PA|IPR013217|Methyltransferase
type 12
         (319 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   8.2  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 93  ELAPDNTSAPVRVFSETTNHANKQNT 118
           +L P++TS   + F  + N+ N  NT
Sbjct: 117 DLVPNHTSDQHKWFQMSINNTNNNNT 142


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 3   DNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNN 48
           DN +   Q GNR  +N +   K N   N + D  Q    Q   + N
Sbjct: 448 DNQNANKQNGNRQNDNRQNDNKQNG--NRQNDNKQNGNRQNDNKQN 491


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,537
Number of Sequences: 429
Number of extensions: 4492
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 319
length of database: 140,377
effective HSP length: 58
effective length of query: 261
effective length of database: 115,495
effective search space: 30144195
effective search space used: 30144195
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)