Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005451-TA|BGIBMGA005451-PA|IPR000727|Target SNARE
coiled-coil region
(112 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||... 54 4e-09
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 33 0.014
SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr 1||... 32 0.019
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 30 0.10
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 29 0.17
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 2.2
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 2.8
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 2.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 3.8
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 3.8
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 25 3.8
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 24 5.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 5.0
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 24 5.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 24 5.0
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 24 6.6
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 24 6.6
>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 54.4 bits (125), Expect = 4e-09
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 20 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRV 79
D++ENEN+ +L+GK+ SLK +++ +G E+ KL+ ++D D + L TM R+
Sbjct: 28 DSLENENDERISKLTGKVKSLKELTMNIGTEITSSTKLMESMNDSFDSTKSLLSGTMTRL 87
Query: 80 LRLGK 84
+ K
Sbjct: 88 KNVSK 92
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 32.7 bits (71), Expect = 0.014
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 2 RRAREGYHYQPVPRVATEDTIENENER-----MAEELSGKISSLKYISIELGNEVRDQEK 56
+RA E + Q +E +E E++R E+ G ++SL + N++ DQ +
Sbjct: 453 KRANESNNLQREIADLSEQIVELESKRNDLHSALLEMGGNLTSLLTKKDSIANKISDQSE 512
Query: 57 LLRGLDD-DVDRSSGFLGKTMGRVLRL 82
L+ L+D D+ S F GK M ++L+L
Sbjct: 513 HLKVLEDVQRDKVSAF-GKNMPQLLKL 538
>SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 91
Score = 32.3 bits (70), Expect = 0.019
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 22 IENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLD 62
+ ++NER E LSG++SSLK ++ ++ + D ++ R +
Sbjct: 1 MNDQNERRLETLSGQVSSLKNVTYDIYSRANDYTRIDRATE 41
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 29.9 bits (64), Expect = 0.10
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 15 RVATEDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGK 74
R+ T T+ + MA + G ++K +++E+ ++V D+ DDV+ +G++ K
Sbjct: 56 RLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDK---FEAQFDDVNVQTGYMNK 112
Query: 75 TMGRV 79
MG V
Sbjct: 113 AMGSV 117
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.1 bits (62), Expect = 0.17
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 20 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRV 79
DT++ E ER++E L ++I N + D+E + L + + ++ L + RV
Sbjct: 365 DTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNELLNE--NRV 422
Query: 80 LR 81
L+
Sbjct: 423 LK 424
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 2.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 ENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSS 69
+++ E + E+L + K +S L + D K +R D D RS+
Sbjct: 453 DSDVEELREQLENLTALTKKLSERLSSSTFDNSKFIRTEDKDTVRSA 499
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 53 DQEKLLRGLDDDVDRSSGFLGKTMGRV 79
D ++ L+ VDRSS F GK+ GR+
Sbjct: 212 DMGRVYYFLETLVDRSSTFSGKSTGRI 238
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 19 EDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLL 58
++ E EN+RM EEL+G + L+ ++ + ++ ++ L
Sbjct: 989 QEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQEL 1028
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 24 NENERMAEELSGKISSLKYISIELGNEVRDQEKLL 58
+EN + E+L K S++ + +VR QEKL+
Sbjct: 267 DENTKEIEKLKEKEGSIRRNLLAFDRKVRKQEKLI 301
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 3.8
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 8 YHYQPVPRVATEDTIENENERMAEELSGKISSL--KYISIELGNEVRDQEKLLRGLDDDV 65
Y + ++ T +E ENE + L ISS+ + ++L N + L L +
Sbjct: 443 YSSTEISQITTNREVEEENEEILLVLLNIISSVIGRNAELDLENPISSLLPALEQLSNYS 502
Query: 66 DRSSGFLGKTMGRVLRLGKGNHN 88
+R L K + + L K +++
Sbjct: 503 NREISDLAKDVYKTLIQSKDDYS 525
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 3.8
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 3 RAREGYHYQPVPRVATEDTIENENERMAEELSGKISSLKYISIELGNEVRDQE-KLLRGL 61
+AR+G + + + E +N N + E + + S L + V + E +LL+GL
Sbjct: 164 KARKGRNLNSM-LIVKEPIKQNTNAPILPETASFLQQNDENSNFLNSRVNNDEFQLLKGL 222
Query: 62 DDDVDRSSGFL 72
++++ +S+G L
Sbjct: 223 NNELKKSNGTL 233
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 24.2 bits (50), Expect = 5.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 20 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKL 57
D + NE + EL GK ++Y+ E ++ E L
Sbjct: 569 DLVNKRNEDLLIELQGKEEKIQYLETENEEVLQKYENL 606
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.2 bits (50), Expect = 5.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 25 ENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGK 74
E + +E+S + +I L N V+D EK + L+ + ++S L K
Sbjct: 967 EYYKQLQEISDSLMPPPVSNISLNNYVKDDEKKQKFLNSVIIKASVILEK 1016
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 24.2 bits (50), Expect = 5.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 60 GLDDDVDRSSGFLGKTMG 77
G+DDD+D GF +T G
Sbjct: 148 GMDDDMDMDGGFGTRTRG 165
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.2 bits (50), Expect = 5.0
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 45 IELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMG 77
+++ EV + E+ L +D++ R GF+ + +G
Sbjct: 147 LDIEAEVDEDEEELEDEEDEIGREDGFIEEEVG 179
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 23.8 bits (49), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 46 ELGNEVRDQ-EKLLRGLDDDVDRSSGFLGKTMGRVL 80
+L NE R+ + LL LDD ++ +LG + VL
Sbjct: 218 DLLNEQRNALQSLLDSLDDQIEPDVSYLGVPLAAVL 253
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 23.8 bits (49), Expect = 6.6
Identities = 12/61 (19%), Positives = 32/61 (52%)
Query: 19 EDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGR 78
++ + + + M + + I +++ + +G E+ Q LL LD+ ++ ++ L + M R
Sbjct: 132 QEQLYQQQDVMLDGVYDTIGNIRGQAALMGEELGQQADLLDTLDNSIETTNSKLRRGMKR 191
Query: 79 V 79
+
Sbjct: 192 L 192
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.135 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,192
Number of Sequences: 5004
Number of extensions: 14215
Number of successful extensions: 62
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 17
length of query: 112
length of database: 2,362,478
effective HSP length: 64
effective length of query: 48
effective length of database: 2,042,222
effective search space: 98026656
effective search space used: 98026656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)
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